Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P24
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044)             37   0.021
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)           28   7.2  
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)                   28   9.5  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             28   9.5  
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_10747| Best HMM Match : Carb_kinase (HMM E-Value=0.044)
          Length = 185

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = +2

Query: 665 DGLFLITEKPNLIKDFD---SPVILTPNKIXFERL 760
           DG+ ++T  P +IK++D   S VILTPN + F+RL
Sbjct: 9   DGIAVVTTYPEIIKNYDSKKSKVILTPNVVEFDRL 43


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +2

Query: 479  PELIVHPLLDKQDAVEEILPWFDRLHSI---VIGPGLGRDWQTFDIIAKLIEVIKQKKIP 649
            P ++V  +L    +++++LP   +LH+I   VI  GLG  +   D+ + + +  + ++I 
Sbjct: 1314 PNVLV--VLTDGKSLDDVLPEATKLHNIGVKVIAVGLGCCYSVKDLASLVNDKSQDRQIT 1371

Query: 650  IIIDADGLFLITEKPNLIKDFDSPVILTPN 739
               D     + T K  + +D D  +  +PN
Sbjct: 1372 TEFDNLDTVVSTLKERICRDIDECLTSSPN 1401


>SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)
          Length = 1075

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 337 RKNRGNWWFFRIYWC 381
           RK+R  WWF+ I++C
Sbjct: 206 RKSRKYWWFYEIFFC 220


>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
          Length = 1153

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 664 SINDNGYFLL-LDDFY*FCYYIKCL 593
           SINDN +     + FY FCY+ +CL
Sbjct: 151 SINDNSWCQSQCESFYHFCYFSRCL 175


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 106 LTLTKVAYVSYDSFTSLKIKRYRS 177
           +TLTK    S+DS +SLK+ +Y S
Sbjct: 366 VTLTKAHMASFDSDSSLKVTQYHS 389


>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 313 IQRWYAYFNKVFHTCRIHVVSMSNKRK 233
           + +W   +   F+ C+ H++S++NKRK
Sbjct: 303 LTKWSNDWQMEFNVCKCHLLSITNKRK 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,135,612
Number of Sequences: 59808
Number of extensions: 400208
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)