Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P24
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...   150   1e-36
Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical pr...    29   4.8  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score =  150 bits (363), Expect = 1e-36
 Identities = 75/162 (46%), Positives = 103/162 (63%)
 Frame = +2

Query: 275 MKNLIKICIPPLDKSSHKGQAGRIGVIGGSLEYTGAPYFAGISALKVGADLAHIFCSSVA 454
           M + IK+ +P L     KG  G++GVIGGSLEYTGAPYFA  SA ++GADL HIFC   A
Sbjct: 1   MDHFIKL-LPKLTPHLRKGDCGKMGVIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDA 59

Query: 455 SAVIKSYSPELIVHPLLDKQDAVEEILPWFDRLHSIVIGPGLGRDWQTFDIIAKLIEVIK 634
           + VIK YSP+LIVHP +        I+P   R+ +IVIGPGLGR+   + ++ +L E ++
Sbjct: 60  AQVIKGYSPDLIVHPGM----TANSIIPKLSRMDAIVIGPGLGRNPNIWPLMQELFEFVR 115

Query: 635 QKKIPIIIDADGLFLITEKPNLIKDFDSPVILTPNKIXFERL 760
            + +P +ID DGL+ ++E         S  +LTPN + F RL
Sbjct: 116 NRDVPFVIDGDGLWFVSEHIEKFPRQMSATVLTPNIVEFSRL 157


>Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical
           protein C53B4.3 protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 338 GRIGVIGGSLEYTGAPYFAGISALKVGADLAHIFCSSVASAVIKSYSPELIVHPLLDKQD 517
           GR+G+  G + +   P F+ I+A K+G DLA +  S+   A+     P L++   ++K+ 
Sbjct: 144 GRMGLTFG-IGFIFVPIFS-IAATKLGGDLAPLLVSAALCAL-----PSLVLETCIEKKS 196

Query: 518 AVEEI 532
              EI
Sbjct: 197 YEHEI 201


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -3

Query: 735 GVNITGESKSLIKFGFSVIKNKPSASMIMGIFFCLMTSINFAIISNVCQSLPNPGP 568
           GV   G S SLI   F V  + P+  +I   FFCLM S     +S    SL +  P
Sbjct: 404 GVASFGSSFSLILLAFFVDCSNPTTGLI---FFCLMYSSMGTFVSGFYTSLLSLAP 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,620
Number of Sequences: 27780
Number of extensions: 315900
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)