Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P24
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.58 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +2

Query: 254 YNMDPTSMKNLIKICIPP----------LDKSSHKGQAGRIGVIGGSLEYTGAPYFAGIS 403
           +N D   +K  +K+C+PP          L+K    G+   +G  G +    GA    G+ 
Sbjct: 425 FNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEIGAGEEDGVL 484

Query: 404 ALKVGADLA 430
           A+ V A +A
Sbjct: 485 AIHVKAKMA 493


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 658 NDNGYFLLLDDFY*FCYYIKCLPISS*SRANNYRMEPVKPW 536
           N+N Y       Y    YI+ +PI       N+   P+ PW
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 658 NDNGYFLLLDDFY*FCYYIKCLPISS*SRANNYRMEPVKPW 536
           N+N Y       Y    YI+ +PI       N+   P+ PW
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 658 NDNGYFLLLDDFY*FCYYIKCLPISS*SRANNYRMEPVKPW 536
           N+N Y       Y    YI+ +PI       N+   P+ PW
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,744
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)