Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P23
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      29   4.5  
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4)              28   6.0  
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  28   7.9  

>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119 NWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINW--AVYKQAVPIPGM 283
           NW         EQ+ +L  F+   + Y R +   PP+   + W    Y Q + IPG+
Sbjct: 174 NWMGFVNCARNEQEQNLEVFQYGGNIYYRAIKDVPPDQELLVWYGGTYMQFLGIPGI 230


>SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 326 YPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 454
           +  D    LVES W +V + ID    E +AN  + Q+EI+ TK
Sbjct: 31  FSTDYVENLVESFWTRVDDKIDKAFHERDAN-KTTQEEIHQTK 72


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 413 ANIASYQKEINATKALLPYDQMTMEDFY--DAHPDLALD-PIKKPTFWPHTPEEQLDYVD 583
           A +  Y  + + T  + P   MT ++    D++ D + D P + P  WP T + +L+  D
Sbjct: 468 AKVEHYSTDNSVTYEITPDKSMTRKEKRGNDSNEDTSDDTPSRIPEHWPITKQTKLEKFD 527

Query: 584 P 586
           P
Sbjct: 528 P 528


>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +2

Query: 125  AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 298
            + +AE V ++Q  KA      +   + +R +LA   E   ++ A     VP+ G     +
Sbjct: 738  STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 793

Query: 299  KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 442
               E   +P P+  Q  L  S   +V +A+++    SNAN   Y +E+
Sbjct: 794  AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 839


>SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +2

Query: 125 AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 298
           + +AE V ++Q  KA      +   + +R +LA   E   ++ A     VP+ G     +
Sbjct: 94  STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 149

Query: 299 KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 442
              E   +P P+  Q  L  S   +V +A+++    SNAN   Y +E+
Sbjct: 150 AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 195


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 183 ILKAARCAFCSAGTLSARAAQFTALCDILFAIFRRFFD*SYEC 55
           +L+    AFCS G +      FT  C  L +I     D +++C
Sbjct: 175 LLQKLSLAFCSQGNIRTALQSFTEFCPQLHSISLEGCDINHDC 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,956,559
Number of Sequences: 59808
Number of extensions: 505563
Number of successful extensions: 1529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)