Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P22
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.7  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   6.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.7  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   8.9  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   8.9  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   8.9  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   8.9  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   8.9  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  KKKRKLAFCPSL*VWEIEYSSVR 158
           KK+  L F PS  VW+ EY + R
Sbjct: 363 KKELNLNFLPSFDVWDREYYTAR 385


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 262 ISTMDSVSGKQETSH-KPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQEL 417
           I  MD ++ +    H  PQ  +Q  +S +  SG+F + + LE+   RA L  +
Sbjct: 135 IGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMA--RASLSHI 185


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 183 KFLLHCNHSIILRFSSNIPFLLFSKQN*YYGFSKWQTRNFTQATRFTANN 332
           KFL   N+   +   SN P    S Q  ++G  K   +N  +AT   +N+
Sbjct: 133 KFLTRKNNPSSMSLVSNYPLDAISSQQKFHGNDKTLEKNSAKATINKSNS 182


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 129 LIEKGRMLI-SVFFLFCHKKYILSR*VTQQKNTLYT 25
           + ++G +++  +  LF  ++Y+LS  V  Q+N L T
Sbjct: 99  VFQRGSVIVLELVLLFALREYVLSSNVKDQRNALLT 134


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 388 VEERAHLQELDRELQALH 441
           +EERA L E  +EL+ALH
Sbjct: 119 IEERAKLIEDSKELEALH 136


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 204 DCSEAKTLYRFLRKLRGRRS 145
           DC+ AKTL++ +RKL   ++
Sbjct: 209 DCTTAKTLFKQVRKLENTKN 228


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 422 ENSKLYTHYQNWNLLLLSIPAPTKGTSELIL 514
           EN+ LY      N L  S+ APT+ T + +L
Sbjct: 31  ENNNLYETITTANDLFSSVDAPTEATLDALL 61


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 454 ILVVCVELGVLYPALGGELSPLQAPTQMASQNLHCLADNFQLFAVNLVACVKFL 293
           I V C  + V Y  + G+L P  AP+   S  +      + +FA+ ++  + FL
Sbjct: 103 IAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFALFVLTPLSFL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,289
Number of Sequences: 5004
Number of extensions: 60222
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)