Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P22
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    30   1.3  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    28   5.2  
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674...    28   5.2  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    28   6.9  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    28   6.9  
03_05_0209 + 22014556-22015308                                         27   9.2  

>04_04_1183 -
           31537196-31537290,31537665-31537986,31538176-31538277,
           31538826-31539071,31539385-31539506,31539588-31540344,
           31540447-31540770,31540872-31541052,31541208-31541602,
           31541877-31541942,31542225-31542377,31542593-31542691,
           31542776-31542982,31543432-31543572,31543852-31544019,
           31544302-31544395,31544479-31544585,31545140-31545274,
           31545549-31545656,31545975-31546049,31546197-31546262,
           31546500-31546556,31546678-31546702,31546809-31546889,
           31546966-31547080,31547211-31547370,31547444-31547483,
           31547599-31547780,31547905-31548234
          Length = 1650

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 460 IPILVVCVELGVLYPALGGELSPLQAPTQMA 368
           IP++V  V  GV Y  LGG+L+P +A T ++
Sbjct: 534 IPVIVTVVSFGV-YSLLGGDLTPAKAFTSLS 563


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 419 IENSKLYTHYQNWNLLLLSIPAPTKGT 499
           I+N K+ TH+Q      + +P P+ GT
Sbjct: 828 IDNDKILTHFQELRTRKMKLPLPSAGT 854


>10_08_0851 -
           21065832-21065948,21066361-21066705,21067181-21067489,
           21067574-21067648,21067754-21067917,21067994-21068432
          Length = 482

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 241 SFSFPNKISTMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQELD 420
           SF      STM S S ++ T H+ +D   +   C PD G     +  EL ++R    ++ 
Sbjct: 246 SFGSATSSSTMSSSSFRRST-HRNEDRWWLPVPCVPDGG-ISGKARKELQQKRDCATQIH 303

Query: 421 RELQALHT--LPELESPTS 471
           +   A++T  L ++E P S
Sbjct: 304 KAAVAINTGVLGDMEVPDS 322


>03_06_0353 -
           33317015-33318235,33318567-33318824,33319587-33319904,
           33319949-33320011,33320103-33320496,33320684-33320796,
           33320932-33321639,33321667-33323199,33323395-33323607,
           33323718-33324700,33324890-33325423,33325694-33325820,
           33326083-33326162,33327347-33327377,33327949-33328053,
           33328119-33328124,33328349-33328985,33329144-33329478,
           33330394-33331113
          Length = 2792

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 220 DFHRTFHSFSFPNKISTMDSVSGKQETSHKPQ-DSLQITES 339
           D  +   S  +P+K   M+ +  K ETS KP  DS ++ ES
Sbjct: 457 DVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKES 497


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 207 SIILRFSSNIPFLLFSKQN*YYGFSKWQTRNF 302
           ++ILRFS ++PF LF +   +  F+K  T  +
Sbjct: 296 ALILRFSRDLPFCLFLQTVAFVAFNKVMTAQY 327


>03_05_0209 + 22014556-22015308
          Length = 250

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = +1

Query: 211 LSCDFHRTFHSFSFPNKISTM---DSVSGKQETSHKPQ--DSLQITESCQPDSGDFVMPS 375
           L+ D++R F S S      T      V  KQE  H     +    TESC PD  +     
Sbjct: 83  LAADYYRCFFSLSPSTSDFTACGHTGVGDKQEQHHHQVGVEPSSATESCVPDHSEAPYRD 142

Query: 376 VLELVEERAHLQELDRE 426
             +  E+ +H + +D E
Sbjct: 143 NDDASEDCSHGERMDGE 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,465
Number of Sequences: 37544
Number of extensions: 358486
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)