Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P22
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08)         29   2.3  
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               29   4.1  
SB_19575| Best HMM Match : MbeB_N (HMM E-Value=1.7)                    29   4.1  
SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)                        29   4.1  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             28   5.4  
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)    28   5.4  
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          28   7.1  
SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)                   27   9.4  
SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)                   27   9.4  
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     27   9.4  

>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 201  NHSIILRFSSNIPFLLFSKQN*YYGFSKW-QTRNFTQATR 317
            NH +++R  S++P  +FSK+N  Y   +W Q R+ +Q TR
Sbjct: 1064 NHLLLMRAGSSLPPGVFSKEN-VYSRRRWKQRRSKSQRTR 1102


>SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08)
          Length = 369

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +3

Query: 201 NHSIILRFSSNIPFLLFSKQN*YYGFSKWQTRNFTQATRFTANN*KLSARQWRF 362
           NH +++R  S++P  +FSK+N  Y   +W+   +  ++   + N +  A +W++
Sbjct: 115 NHLLLMRAGSSLPPGVFSKEN-VYSRRRWKQVQYLPSSGGPSRNAR-DATKWKY 166


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 265 STMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMP 372
           ST +S S    +SH P  + Q +   +P S D++ P
Sbjct: 227 STQESYSSNSTSSHYPYSTGQNSRPARPSSHDYIYP 262


>SB_19575| Best HMM Match : MbeB_N (HMM E-Value=1.7)
          Length = 220

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 374 LCWSL*RRELTSKSWIENSKLYTHYQNWNLLLLSIPA 484
           LC SL   ELT  S  ENS + T +QNW  L L+  A
Sbjct: 103 LCASLSALELTMSS-NENSDIDTDWQNWKDLFLAAVA 138


>SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)
          Length = 256

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +1

Query: 265 STMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQELDRELQALHT 444
           ST+D        S   +    I  S   +SGD + PS +E  ++  H   ++     +H 
Sbjct: 83  STIDESGDVIHPSTIDESGDVIHPSTIEESGDVIHPSTIEESDDVIHPSTIEESGDVIHP 142

Query: 445 LPELESPTSQHPST 486
               ES    HPST
Sbjct: 143 STIEESGDVIHPST 156


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 334 ESCQPDSGDFVMPSVLELVEERAHLQELDRELQ-ALHTLPELESP--TSQHPSTNKGDQR 504
           E C  ++ +     +L+   +    + +D   Q A H    LE+P  TS HPST + + R
Sbjct: 229 EVCSQETSESHRIEILDQSRQSGQREAIDINRQYASHRNSRLETPRDTSSHPSTQQRENR 288

Query: 505 IN 510
            N
Sbjct: 289 PN 290


>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 RGESSPPRAG*RTPSSTHTTRIGISYFSASQHQQRGP 500
           RGE +P R   +   +T+TT  GIS  S +   QR P
Sbjct: 176 RGEYTPSRRTAKDTKNTNTTPSGISNVSEAYFHQRQP 212


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  CIFYGKIKKKRKLAFCPSL*VWEIEYSSVRAIFV 170
           C  + K  KKRK  F P L +W++    ++  F+
Sbjct: 222 CDTFLKFSKKRKQVFTPRLRIWKLRDPGIKVKFL 255


>SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 690

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +2

Query: 308 SHKIHCK*LKVVSQTVEIL*CHLCWSL*RRELTSKSWIENSKLYTHYQNWNLLLLSIPAP 487
           +HK     ++ V + +EIL   +C     R+L S S+ +   L+  Y    +LL  + A 
Sbjct: 440 NHKESTDLVENVFRGLEILCNDICEDELERQLASSSFDKFGNLFKQYMMVEILLGLLRAS 499

Query: 488 TKGTSELILS 517
            +G  EL LS
Sbjct: 500 REGNWELHLS 509


>SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 586

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +2

Query: 308 SHKIHCK*LKVVSQTVEIL*CHLCWSL*RRELTSKSWIENSKLYTHYQNWNLLLLSIPAP 487
           +HK     ++ V + +EIL   +C     R+L S S+ +   L+  Y    +LL  + A 
Sbjct: 440 NHKESTDLVENVFRGLEILCNDICEDELERQLASSSFDKFGNLFKQYMMVEILLGLLRAS 499

Query: 488 TKGTSELILS 517
            +G  EL LS
Sbjct: 500 REGNWELHLS 509


>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
 Frame = +1

Query: 199 AIIQLSCDF----HRTFHSFSFPNKISTMDSVSGKQETSHKPQDSLQITESCQPDSGDFV 366
           A+ Q+S DF     R FH    P  +  +D ++  +  +H     +   E C   +    
Sbjct: 480 AVGQMSTDFANAFQRKFHMKVIPGLLHVLDDLANPRVQAHAGAALVNFCEDCPKSTLHPY 539

Query: 367 MPSVLELVEE--RAHLQEL 417
           + S+L  +E    A LQEL
Sbjct: 540 LDSILAKLEAVLSAKLQEL 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,060,988
Number of Sequences: 59808
Number of extensions: 419952
Number of successful extensions: 1158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)