Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P21
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 30 0.29
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 30 0.29
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.7
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.8
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 26 4.8
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 26 6.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 310 RIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSH--AEELHAEISNVDANVKETTEALCIR 483
R+K D +I L + + ++ ++ + + V SH +LH + NV++T +
Sbjct: 143 RLKSMDSDIHALISMAVRDYLANLLQKMIVESHHRTSQLHTDNYKQVDNVRQTLANFAYK 202
Query: 484 ADELIRARRVELNI 525
E RR LNI
Sbjct: 203 EYESEERRRTVLNI 216
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 241 WGPAFR--SVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAE 414
W FR S+ + E FV Q +I++ +E+++ F+YQ FI++ L +R++ E
Sbjct: 14 WKEIFRTHSIAQTIQLEKFVSQ---QIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLE 70
Query: 415 EL 420
++
Sbjct: 71 KV 72
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -3
Query: 551 SSIFSMVAAMFSSTLRALINSSALMHSASVVSLTLASTLDISACNSSA*ERTCSNS 384
SS S ++ FSST + +SS+ + S S T +STL S+ +SS + S+S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHS 400
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/133 (18%), Positives = 60/133 (45%)
Frame = +1
Query: 301 LDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISNVDANVKETTEALCI 480
L +R+++ K+++ + + ++ + S L E+S + + + T ++
Sbjct: 45 LSERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQ 104
Query: 481 RADELIRARRVELNIAATIEKMELCLPLLTTYSKLKSQVXAKRYYPALKTLXQLEHVLLP 660
E+ + N+A ++ ++ L+T Y KL++ +++ A+ +L Q LL
Sbjct: 105 MTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQNQKFGEAI-SLMQATLQLLN 163
Query: 661 RVGPYKWCAQISS 699
Y+ +I+S
Sbjct: 164 FFKKYRSVERIAS 176
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 328 YRAALFDHLIVARMLRALHLRKRIGM 251
+R + DH + R LRA+HL K I +
Sbjct: 106 FRGSFGDHHVNPRTLRAMHLNKMISL 131
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 295 QQLDDRIKQHDKEI--EKLC-NFHYQGFIDSIRELLQVRSHAEELHAEIS 435
Q LD R K+ + I E+ C N Q +DS +++++ + H L A IS
Sbjct: 17 QSLDKRYKRIKRLINNEQFCKNVILQKLVDSTKDIIENKVHGNILAATIS 66
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 412 EELHAEISNVDAN---VKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLTT 573
+++ A ++N A +K+T + I+++ I A +I A ++K +L + L+TT
Sbjct: 338 DDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFAILDKYKLAVDLITT 394
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 477 AQCFSSLFDISIYIRYFSMQFFSMRTDLQQFSYR 376
A CF F +Y+ F +Q F + D +++R
Sbjct: 129 ALCFFLWFMFGLYVASFIVQIFIAKNDTPNYTFR 162
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.3
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 551 SSIFSMVAAMFSSTLRALINSSALMHSASVVSLTLASTLDISACNSSA*ERTCSNS 384
SSI S A + S+T+ + ++ ++S LT +STL S SS+ RT S S
Sbjct: 752 SSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTS 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,459
Number of Sequences: 5004
Number of extensions: 47053
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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