Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P21
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0441 + 3418622-3420988 81 9e-16
10_08_0002 - 13986969-13989338 77 1e-14
01_03_0233 + 14042548-14044950 46 2e-05
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 32 0.53
03_04_0105 - 17322276-17322399,17322516-17322740,17323388-173235... 29 2.8
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 29 3.8
07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159 29 5.0
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 28 6.6
>03_01_0441 + 3418622-3420988
Length = 788
Score = 81.0 bits (191), Expect = 9e-16
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Frame = +1
Query: 244 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 423
GP R ++ EA +Q L +K+ + EIE+LC HY+ FI ++ EL V A+EL
Sbjct: 33 GPIIRHGFDSGKPEALMQNLRSIVKKKEVEIEELCRLHYEDFILAVDELRGVLVDADELK 92
Query: 424 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLTTYSKLKSQVXA 603
++ + ++++ + A + DEL ++ NI I +++C+ +++ +
Sbjct: 93 GMLTGENIHLQKVSSATLLNLDELFELYSIKKNIGEAITTLKICVKVISLCMACNGYIAE 152
Query: 604 KRYYPALKTLXQLEHVLLPRVGPYKWCAQ-ISSDIPRLRXAI 726
+++PALKTL +E L + P K + ++ IP ++ I
Sbjct: 153 AKFHPALKTLDTIEKGYLKNI-PLKLLKKVVAKHIPLIKMHI 193
>10_08_0002 - 13986969-13989338
Length = 789
Score = 77.0 bits (181), Expect = 1e-14
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Frame = +1
Query: 244 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 423
GP R +E E+ +Q L +K + EIE+LC HY+ FI ++ EL V A+EL
Sbjct: 33 GPIVRHAFESGKPESLLQGLRSIVKMKEVEIEELCRVHYEEFILAVDELRGVLVDADELK 92
Query: 424 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLTTYSKLKSQVXA 603
+S + ++E +L ++ DEL+ V N+ + +++CL + + +
Sbjct: 93 GMLSGENLRLQEVASSLLLKLDELLELYSVNKNVEEALGMLKICLQVTSLCQMCNKDIAE 152
Query: 604 KRYYPALKTLXQLEHVLLPRVGPYKWCAQ-ISSDIPRLRXAI 726
R + ALK+L +E L + P K + + IP ++ I
Sbjct: 153 ARLHSALKSLELIEKDFLQNI-PLKLLKKAVQKQIPIVKLYI 193
>01_03_0233 + 14042548-14044950
Length = 800
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 244 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 423
GP R + E + L + + EIE+LC H+ FI ++ +L + + A+ L
Sbjct: 34 GPFVRRAFACGRPEPLLASLRAAARDREAEIEELCRAHFHDFIRAVDDLRSLLADADALK 93
Query: 424 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLTTYSKLKSQVXA 603
+S A + + L + + AR + N+++ + C+ LL ++ + +
Sbjct: 94 GSLSASHAALLSSAAPLLASLESFLAARGLAGNLSSALASSRRCVRLLALANRANAHLQG 153
Query: 604 KRY--YPALKTLXQLEHVL 654
+ Y AL+ + ++ L
Sbjct: 154 GNHNLYLALRAVDAIDRDL 172
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Frame = +1
Query: 280 HEAFVQQLDDRIKQHDKEIEKLCNFHYQGFID-SIRELLQVRSHAEELHAEI-------S 435
+E+F+ +L++R KQ + E+E L H F S+ + + + H EE++ ++ +
Sbjct: 596 YESFIHKLEERQKQTEIELENLRKEHNSCFYTVSVLQAQKQKMH-EEMNDQLMRFVEDRT 654
Query: 436 NVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLT 570
++A KE E + + + +RV N +A +E+++ L LL+
Sbjct: 655 TLEAQNKE-FERRAVATETAL--KRVRWNYSAAVERLQKDLELLS 696
>03_04_0105 -
17322276-17322399,17322516-17322740,17323388-17323588,
17324705-17324794,17324945-17325059,17325238-17325439
Length = 318
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 235 DYWGPAFR---SVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELL 393
D W +F VYE G F +LD K +E CNF + +I++I+ L+
Sbjct: 251 DEWPKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSCNFVMRAYINNIKLLI 306
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 391 LQVRSHAEELHAEISNVDANVKETTEALCIRADEL 495
LQ+R L +IS ++ V+E ++ LC DEL
Sbjct: 236 LQIRGQTAALVTQISGLEQQVEELSKKLCSTEDEL 270
>07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159
Length = 522
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 211 IQEIEGIDDYWGPAFRSVYEG-EGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRE 387
+Q + +D W +V +G E + F+ +D+ K + + FH GF+ S+
Sbjct: 331 LQRFDAVD--WLDLTLAVPQGVEAYRTFMDDMDNLPKCETLVVALIAQFH--GFVPSMLH 386
Query: 388 LLQVRSHAEEL 420
LL+ SH ++L
Sbjct: 387 LLRRCSHVKKL 397
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 522 HCSYH*KNGTVFTSPHYLLQTQIPSXSEEI 611
HC+ H N T F HYL++TQ+ S +E +
Sbjct: 203 HCT-HGHNRTGFMIVHYLMRTQLSSVTEAL 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,528
Number of Sequences: 37544
Number of extensions: 267832
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -