Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P21
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 293 TNASCPSPS*TDRNAGPQ 240
           TN SCPSP  T +  G Q
Sbjct: 614 TNQSCPSPPVTTKRDGTQ 631


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 250 PAPNNHLYLRFPESLHSFS 194
           P  NNHLY   P+S   FS
Sbjct: 84  PEYNNHLYGSTPDSRDYFS 102


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 211 IQEIEGIDDYWGPAFRSVYEGEGH 282
           +QE +  D Y+G  F   YE   H
Sbjct: 423 VQETDKYDAYYGNRFSGEYEIPAH 446


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 492 IDQGSKSRTEHCSYH*KNGTVFTSPHYLLQT 584
           ID+G +S+T+   +    GTV    +Y+ ++
Sbjct: 219 IDEGKESKTKLSQWRKDGGTVKKKVNYVYRS 249


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 623 LKLXSNSNMCYCRESVHT 676
           LKL S+  MC  ++S+H+
Sbjct: 68  LKLLSDGLMCVEKDSIHS 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,165
Number of Sequences: 438
Number of extensions: 3482
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)