Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P20
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   1.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   3.1  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   5.5  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   5.5  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   7.2  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   9.5  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +1

Query: 262 LLNTIFQLSSIFFCRK*CCNLSCCAVRCCLYSSVLHCGYVCYQVLHLPL*HISAAPVCTL 441
           L+ TIF   ++ F       LS    R  +Y+   +  Y      H  + HI+ +P  TL
Sbjct: 10  LVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISHIALSPTSTL 69

Query: 442 NLVTNISGRC 471
            L  +  GRC
Sbjct: 70  LLSVDEEGRC 79


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 406 MASAGPGSTHIHNGVLKNINSTA 338
           ++S+G GST IH G +++ NS A
Sbjct: 224 LSSSGDGSTAIHAGPIQHQNSNA 246


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 391 PGSTHIHNGVLKNINSTAQHS 329
           P  TH+H G L   +S+A+HS
Sbjct: 200 PSGTHLHEGSLLLEDSSARHS 220


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 270 YNFPAFLYFFLQEVMLQFVLLCCAVLFIFF 359
           Y FP  +Y     V++ F+ LC  V    F
Sbjct: 457 YKFPGSVYLSYYGVLINFLALCALVYISIF 486


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 455 FVTKFNVHTGAADICHNGKCRTW*HTYPQWSTEE 354
           F  K   HTG  D C +  CR     Y ++S  E
Sbjct: 111 FSYKAREHTGKLDFCAHCNCRFTITPYSKYSNSE 144


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 391 PGSTHIHNGVLKNINSTAQHSKTNCSITSCKKK 293
           PG  HI+     N NST   SK   S T+  K+
Sbjct: 110 PGQKHINGKPPSNSNSTEDASKPTSSDTASVKE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,178
Number of Sequences: 5004
Number of extensions: 47789
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)