Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P20
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1070 + 10932102-10932291,10936686-10936947,10937158-109372... 31 0.59
05_02_0110 + 6702828-6703065,6703145-6703351,6703536-6703684,670... 29 1.8
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 29 2.4
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 29 2.4
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 29 3.2
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 29 3.2
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 29 3.2
09_03_0127 + 12573429-12574857,12575269-12575903 28 4.2
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 28 5.5
11_03_0161 - 10949552-10950925 28 5.5
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134... 28 5.5
08_02_0395 - 16638499-16638750 28 5.5
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 27 9.7
>08_01_1070 +
10932102-10932291,10936686-10936947,10937158-10937292,
10937468-10938791
Length = 636
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 339 AVLFIFFSTPLWICVLPGPALAIVTYIGCTCVHIELGHKH 458
A +F+ S P W+ V ALA ++ + ++ +LGH+H
Sbjct: 322 AQVFLRDSFPTWVAVASYAALAALSVVAVPLLYPQLGHRH 361
>05_02_0110 +
6702828-6703065,6703145-6703351,6703536-6703684,
6704096-6704369,6706011-6706228
Length = 361
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 421 PIYVTMASAGPGSTHIHNGVLKNINSTAQHSKT 323
PIY+T+ G+ + NG LK+ NS + + T
Sbjct: 220 PIYLTLYGTSNGADYDRNGCLKSYNSLSSYHNT 252
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -3
Query: 336 STARQIAASLPA-KKNRGKLENCIQQGLAELG*PGHPDLRGEPAAQALRTPTLSITFTCN 160
S Q AAS KKNRG N + G E G PG E + R P C+
Sbjct: 33 SPGSQSAASTERRKKNRGSKRN-LSDGSGEDGRPGKKINLEEEELEEERMPLEDEASACS 91
Query: 159 SCYNQIFNTY 130
SC + + Y
Sbjct: 92 SCSSPLCEPY 101
>03_06_0030 +
31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 541 GMTPCGSCTSGPRSSATN 488
G +P GSCT PRSSA N
Sbjct: 457 GASPIGSCTVDPRSSAIN 474
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 314 HHFLQKKIEESWKIVFSKA*PN*GDPGILIFGASLPHKHYA 192
HH LQ++ W + S A P+ P L A+ P K+YA
Sbjct: 366 HHHLQQQRANPWPVQESYAIPHDETPPPLDMRAATPRKNYA 406
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 188 GVRSACAAGSPRRSGCPGHPSSAR 259
G R C G PRR G P H + R
Sbjct: 43 GCRRGCRRGGPRRGGAPAHLRAPR 66
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 314 AAICLAVLCGAVYI-LQYSIVDMCATRSCTCHCDI 415
A C A C A + L+ C TRSC CHC I
Sbjct: 97 AVDCAAAGCAAAEVTLRARWWVHCLTRSCDCHCRI 131
>09_03_0127 + 12573429-12574857,12575269-12575903
Length = 687
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 375 ICVLPGPALAIVTYI-GCTCVHIELGHKHKRKVRDEWVGFVAELRG 509
+ V G LAIV + C C+ +VR+ +GF+ EL G
Sbjct: 6 VVVFAGRVLAIVALLLACCCMAAAAQGGEGARVRESLIGFLTELAG 51
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 324 VLLCCAVLFI---FFSTPLWICVLPGPALA 404
VLLCCAVL + F+TPL I + P +A
Sbjct: 31 VLLCCAVLLLPIYLFTTPLLIFLGQDPKIA 60
>11_03_0161 - 10949552-10950925
Length = 457
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 231 PDLRGEPAAQALRTPT-LSITFTCNSCYNQIFN 136
PD+R E +L T LS FTC SC NQ+ +
Sbjct: 243 PDVRVESGFLSLYTSDDLSGKFTCGSCRNQLLS 275
>11_01_0165 -
1349319-1349399,1349523-1349609,1349691-1349809,
1349899-1350137,1350240-1350296,1350593-1350679,
1350822-1350955,1350971-1351357
Length = 396
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 324 VLLCCAVLFI---FFSTPLWICVLPGPALA 404
VLLCCAVL + F+TPL I + P +A
Sbjct: 31 VLLCCAVLLLPIYLFTTPLLIFLGQDPKIA 60
>08_02_0395 - 16638499-16638750
Length = 83
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 302 AGSDAAICLAVLCGAVYILQYSIVDMCATRSCTCHCDIYRLHLC 433
A A +CL VL ++ + AT + TC+CD + C
Sbjct: 5 AAKIAVVCLVVLSVGQSMMMTAAATTAATGATTCNCDTSGCYNC 48
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +3
Query: 354 FFSTPLWICVLPGP----ALAIVTYIGCTCVHIELGHKHKRKVR 473
FF T W+ P + +V Y GC + +LGH VR
Sbjct: 260 FFRTTGWLLFTPYSWGIICILVVLYFGCEAMFADLGHFTSASVR 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,494
Number of Sequences: 37544
Number of extensions: 323342
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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