Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P20
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 30 1.2
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 30 1.2
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 30 1.2
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical... 30 1.2
AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical ... 30 1.2
AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical ... 30 1.2
AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical ... 29 2.2
AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical ... 29 2.2
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 29 2.9
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 6.6
AC006833-5|AAF60949.1| 97|Caenorhabditis elegans Hypothetical ... 27 6.6
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 27 8.7
AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophi... 27 8.7
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 27 8.7
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 CRK*C-CNLSCCAVRCCLYSSVLHCGYVC 384
CR+ C C +CC RCC CG C
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGCGC 125
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 CRK*C-CNLSCCAVRCCLYSSVLHCGYVC 384
CR+ C C +CC RCC CG C
Sbjct: 95 CRRCCTCCRTCCCTRCCTCCRPCCCGCGC 123
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 CRK*C-CNLSCCAVRCCLYSSVLHCGYVC 384
CR+ C C +CC RCC CG C
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 CRK*C-CNLSCCAVRCCLYSSVLHCGYVC 384
CR+ C C +CC RCC CG C
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 CRK*C-CNLSCCAVRCCLYSSVLHCGYVC 384
CR+ C C +CC RCC CG C
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGCGC 125
>AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical
protein Y43F8B.1c protein.
Length = 260
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 371 QWSTEEYKQHRTAQQDKLQHHFLQKKIEESW 279
QW E + H Q + LQ H KK+E W
Sbjct: 188 QWPPPEAEAHEREQVEVLQKHIPTKKMERQW 218
>AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical
protein Y43F8B.1b protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 371 QWSTEEYKQHRTAQQDKLQHHFLQKKIEESW 279
QW E + H Q + LQ H KK+E W
Sbjct: 237 QWPPPEAEAHEREQVEVLQKHIPTKKMERQW 267
>AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical
protein Y43F8B.1a protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 371 QWSTEEYKQHRTAQQDKLQHHFLQKKIEESW 279
QW E + H Q + LQ H KK+E W
Sbjct: 237 QWPPPEAEAHEREQVEVLQKHIPTKKMERQW 267
>AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical
protein Y71G12B.23a protein.
Length = 594
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 178 YHFYMQLMLQPDIQHVLGIIY*LH*TIAFSINDIY 74
++++M D+QH+L IIY + T+ F+ + +Y
Sbjct: 397 FYYFMCAYAHRDLQHILMIIYGIFTTLLFTSSTVY 431
>AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical
protein Y71G12B.23b protein.
Length = 537
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 178 YHFYMQLMLQPDIQHVLGIIY*LH*TIAFSINDIY 74
++++M D+QH+L IIY + T+ F+ + +Y
Sbjct: 397 FYYFMCAYAHRDLQHILMIIYGIFTTLLFTSSTVY 431
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +3
Query: 270 YNFPAFLYFFLQEVMLQFVLLC-----CAVLFI---FFSTPLWICVLPGPALAIVTYIGC 425
Y+ +LY Q++++Q V+LC A +++ FF +P WI ++ +A GC
Sbjct: 228 YSTSMWLYRSKQQIVIQAVILCSFHAVAAYIYVYMQFFPSPPWIIII--GQMAWQWSNGC 285
Query: 426 TCV 434
C+
Sbjct: 286 VCI 288
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 448 PSSMCTQVQPIYVTMASAGPG 386
P++ C QVQP+YV G G
Sbjct: 71 PAAYCPQVQPVYVQSGGGGCG 91
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 CRK*CCNL---SCCAVRCCLYSSVLHCGYVC 384
CR CC +CC RCC CG C
Sbjct: 77 CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 107
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 CRK*CCNL---SCCAVRCCLYSSVLHCGYVC 384
CR CC +CC RCC CG C
Sbjct: 79 CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 CRK*CCNL---SCCAVRCCLYSSVLHCGYVC 384
CR CC +CC RCC CG C
Sbjct: 82 CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 112
>AC006833-5|AAF60949.1| 97|Caenorhabditis elegans Hypothetical
protein ZK616.2 protein.
Length = 97
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 417 IGCTCVHIELGHKHKRKVRDEWVGFVAELRGP 512
I CTC+H L H+ +RD V F A P
Sbjct: 43 IDCTCLHSALAHRCGYLIRDALVCFNASKTTP 74
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 203 CAAGSPRRSGCPGHPSSARPC*IQFSSFPLFFFAGSDAAI-CLAVLCGAVYILQYS 367
C +GSP CP P+++ C SS ++ I CL +C QYS
Sbjct: 339 CTSGSPNNGICPTSPNTSNLC----SSGQTVQLDNNNQPINCLVTVCPNTSFCQYS 390
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 371 QWSTEEYKQHRTAQQ-DKLQHHFLQKKIEESWK 276
+WS EEYK R Q +KL+ L++KI E K
Sbjct: 423 EWSIEEYKHSRDTQYLNKLEE--LRRKINEKQK 453
>AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform b
protein.
Length = 165
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 333 CCAVLFIFFSTPLWICVLPGPALAIVTYIGC 425
C ++F+FF P + +L PAL+I + C
Sbjct: 120 CLFLIFLFFLVPPFSLLLLSPALSISLLMSC 150
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 512 RPAELRHEPDPLVAHLPLMFVTKFNVHTGAADICH-NGKCRTW*HTYPQ 369
+P L + DPLVAHL L V N AAD+ H + + HT P+
Sbjct: 42 QPLGLLLKQDPLVAHLALYDVV--NTPGVAADLSHIDSNAKVTAHTGPK 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,971
Number of Sequences: 27780
Number of extensions: 293376
Number of successful extensions: 1195
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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