Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P19
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   161   1e-40
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   2.0  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   4.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   4.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.0  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   7.9  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   7.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   7.9  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  161 bits (391), Expect = 1e-40
 Identities = 70/102 (68%), Positives = 83/102 (81%)
 Frame = +3

Query: 138 GNAENGKQIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 317
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65

Query: 318 DDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 443
           ++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 66  EETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
 Frame = +1

Query: 223 DRIYMDSLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRN----TSLEPRWCLLD 390
           D + +     K   + D  T      R  HG +  S+  L   +     + LE +  L D
Sbjct: 264 DNLVIAGCRNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYD 323

Query: 391 SR------RQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 513
            R      R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 324 CRFLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 226 GPTLCLPPASTVWHWAHRCTKIC 158
           GP L + PAST+ +W     K C
Sbjct: 436 GPHLVIAPASTMENWLREFAKFC 458


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 313 GMTTLSLNILRIPRNTSLEPRWCLLDSRRQMSVLTLLPISNLL 441
           G  T SLN  R+ +  SL   WC +  R  +    + PI+++L
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVFPITSIL 458


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 229 FGPTLCLPPASTVWHWAHRCTKICFPFSALP 137
           +GP L + PAST+ +W    T+       +P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITRFVPKLKCIP 921


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 36  TLSRFSCLKFGAFGSPQKIWLX--HXFSKFXMGVPAGNAE-NGKQIFVQRCAQCHTVEAG 206
           TL     LK  A   P+ IW    H      + +    A+  G++ FVQ   + HT+++ 
Sbjct: 137 TLRTAQILKQQALNQPKCIWKLEKHISKPKLLNLSRAQADLKGEEFFVQAVVRLHTLQSL 196

Query: 207 GKHKVGPNL 233
              K  P +
Sbjct: 197 RTDKGSPKI 205


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 304 PLALLASEYENPAAWPVFRPKNP 236
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 427 ISNLLPSNFKVIENSIRSIFHNISGIYFL 513
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,961
Number of Sequences: 5004
Number of extensions: 73114
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)