Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P18
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 113 2e-26
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.090
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 0.63
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 29 0.63
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 2.6
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 3.4
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 3.4
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.9
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 5.9
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 7.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 7.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 7.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 7.8
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 113 bits (272), Expect = 2e-26
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Frame = +1
Query: 82 SVYK*NKMAKVKNKRNSGLADKVHSKRKAEINK--KKINPFEVHVNREKIKVLGKKSKHD 255
S+ + N + NK++ + + H R+A++ K N F+ + K V G++ K
Sbjct: 14 SIRQANLGTRPNNKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRVKGT 73
Query: 256 KGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVK 435
+G PGVSR + R+ T+G E+K N++ IDRR GE N LS E+KM+ RF+ E+ +
Sbjct: 74 EGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSVEEKMLERFSREQ-Q 132
Query: 436 QHNKKSIYNLADDEILTHRGQTLEQIEKFDDPRSD-DEDEEGKAYGGLXYDFVAEGHFGG 612
+ +K+ +YNL +++LTH + L I+ F++P DE EE L + V HFGG
Sbjct: 133 RRSKRELYNLDAEDVLTHGNRPLSDIDSFEEPGFGLDEGEE------LNDEVVRRMHFGG 186
Query: 613 GMLSKTDS-KDGAKSHK 660
S ++ K+G +HK
Sbjct: 187 FEDSDAENEKEGEGAHK 203
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.9 bits (69), Expect = 0.090
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Frame = +1
Query: 109 KVKNKRNSGLADKVH--SKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRA 282
KV +R + L +++ +KRK E KKI E +++K L K+ + +
Sbjct: 563 KVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAE 622
Query: 283 KAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYN 462
+A QK E E + + R +K +L + + + ER K+ K+
Sbjct: 623 QAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQ--Q 680
Query: 463 LADDEILTHRGQTLEQIEK 519
AD E + + E+ EK
Sbjct: 681 EADREKMAREQRLREEEEK 699
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 29.1 bits (62), Expect = 0.63
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +1
Query: 169 EINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTE-MKLMNKTN 345
E NK H R K K++K + G ++ A K +LG E + +N+T
Sbjct: 298 ESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSG-NKDHATSSEKLSLGNESIHSINETR 356
Query: 346 TFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSI-YNLADD-EILTHRGQTLEQIEK 519
+ +N++ E+ M+ Q+ +++ Y+ D E + Q +E+ +
Sbjct: 357 SSSIEEPDNADNKIVEEEPMLLPVPTTAQGQNVLEAVQYDGLDSLEDMEALIQEMEEEGE 416
Query: 520 FDDPRSDDEDEEGKAYG 570
DD +EDE G G
Sbjct: 417 LDDNSESEEDEHGMTIG 433
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 29.1 bits (62), Expect = 0.63
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Frame = +1
Query: 331 MNKTNTFIDRRIGEKNNQLSAE-DKMIA-----RFAAERVKQHNKKSI--YNLADDEILT 486
+ K +F++ I E N + + DK + R++ + V K+S YN ++++ T
Sbjct: 809 LEKIESFLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKT 868
Query: 487 HRGQTLEQIEKFDDPRSDDEDEEGKAYGGLXYDFVAEGHFGGGMLSKTDSKDGAKSHKDL 666
G +EKF+D + +++ E A + + + S T +KD K
Sbjct: 869 LEGYVETVLEKFNDLKIENKVPE-TAPDVVPSSYPPAAESNVSVSSDTSTKDVEKQEPSS 927
Query: 667 IEQ 675
EQ
Sbjct: 928 AEQ 930
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 370 EKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADD--EILTHRGQTLEQ 510
E NN+ A+D+ + E ++ ++ S +++ D EI+ GQ +EQ
Sbjct: 105 EMNNRDDADDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQ 153
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 442 NKKSIYNLADDEILTHRGQTLEQIEKFDDPRSDDEDE 552
NKK +LAD E + T E +E + + DEDE
Sbjct: 8 NKKQYDDLADIEAQNNVPNTQEVLEAWQESLDSDEDE 44
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 3.4
Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 6/163 (3%)
Frame = +1
Query: 127 NSGLADKVHSKR--KAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKR 300
N+ K+ S R ++ + + + + E +K +K + ++ K Q
Sbjct: 212 NTATRSKLPSMRLTTVQVPSRSVQEIIIEKDPELLKRQAEKYEEERSRARRRLEKRKQLN 271
Query: 301 KETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKM--IARFAAERVKQHN--KKSIYNLA 468
GT + + ++ + R + N++ D+M + R E Q+ K +
Sbjct: 272 NYQNGTGEEEEDYSSFYGPRSTYSEQNEIIDSDRMDRLKRIKQEGAGQYRGYNKDLEENE 331
Query: 469 DDEILTHRGQTLEQIEKFDDPRSDDEDEEGKAYGGLXYDFVAE 597
+D++ + E+ E+ ++ D+EDEE G F A+
Sbjct: 332 EDDLGDFIAEEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDAD 374
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/95 (20%), Positives = 46/95 (48%)
Frame = +1
Query: 112 VKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 291
V+ + +S + V S + + +I E + E+++ G++ + ++ +P +
Sbjct: 324 VQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEME--GEEEEEEEEVPNYESENEL 381
Query: 292 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAE 396
+ + L + + ++F+D + E+NN LSAE
Sbjct: 382 EDKVGDLSLSLGV---ASSFVDEMLRERNN-LSAE 412
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 142 DKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRK 303
DK SK +KK + + + +E++ KK+K+D+ S K+ KRK
Sbjct: 701 DKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 118 NKRNSGLADKVHSKRKAEINKKKINPFEVHVNR 216
N NS LADK+ R E +K +++ H+NR
Sbjct: 763 NVLNSELADKLAQIRHLESDKMELDKLVHHLNR 795
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 406 SFYLQPTTGCFSHQYDDQ*MCLSYSSASFLCPMSLFSSVQL 284
SFY P+T + +Y D Y AS CP L S QL
Sbjct: 342 SFYSLPSTVIGNPKYKDIQAAYLYYYASDSCPKDLSSESQL 382
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 394 EDKMIARFAAERVKQHNKKSIYNLADDEILTHRGQTLEQIEKFDDPRSDDEDEE 555
ED R AERV ++NKK A H+ ++ +DD DE E+
Sbjct: 100 EDPEAERIKAERVAEYNKKK----AAKPKAVHKSLVTLDVKPWDDETPMDELEK 149
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/73 (16%), Positives = 37/73 (50%)
Frame = +1
Query: 337 KTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADDEILTHRGQTLEQIE 516
++++ I+ + + ++++ ++ + + K HN K + L E+L+ + +++
Sbjct: 12 QSSSAIEAILDKPEDEINLKELLEENGVLDECKSHNPKLLEYLCKPEVLSQLIDYILEVD 71
Query: 517 KFDDPRSDDEDEE 555
+ + P +D EE
Sbjct: 72 ETEIPSADGGYEE 84
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/109 (17%), Positives = 48/109 (44%)
Frame = +1
Query: 127 NSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKE 306
+ +AD+ + K+ I + + + K+KV GKK + +A ++R E
Sbjct: 75 SDNIADEENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLEAKKRRIE 134
Query: 307 TLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKS 453
++ E + + + R + + + +++ + + + R ++ KKS
Sbjct: 135 SMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKS 183
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 97 NKMAKVKNKR-NSGLADKVHSKRKAEINKKKIN 192
NK A +K K+ +S +DK S+R+ ++K+N
Sbjct: 1121 NKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLN 1153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,537
Number of Sequences: 5004
Number of extensions: 49307
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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