Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P17
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       24   1.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   1.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   1.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   7.8  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 408 PKICPSDRSRVMVTQFLTEKLEK 476
           P  CP  R R   T+F T +LEK
Sbjct: 1   PNGCPRRRGRQTYTRFQTLELEK 23


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 408 PKICPSDRSRVMVTQFLTEKLEK 476
           P  CP  R R   T+F T +LEK
Sbjct: 152 PNGCPRRRGRQTYTRFQTLELEK 174


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 408 PKICPSDRSRVMVTQFLTEKLEK 476
           P  CP  R R   T+F T +LEK
Sbjct: 211 PNGCPRRRGRQTYTRFQTLELEK 233


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 213 LAEGSKYLSPANLERAFITAKGSVEETKRRLERMFTSRGMMPELCLNRTVEEFKDEWEVV 392
           L+  + Y+  AN+    ++ +  ++E  R       S  ++ ++C      EF    E+ 
Sbjct: 243 LSHFAYYVDMANMLTTPLSEEVLLDELLRHFPERIQSLWVLEKICTTTDAAEFLAAQEIP 302

Query: 393 NYVPLPK--ICPSDRSR 437
              P  K  I P +R R
Sbjct: 303 GQNPGEKTNIAPRERPR 319


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 296 KETREDVYISRYD 334
           + TR+D Y +RYD
Sbjct: 27  RSTRDDKYTTRYD 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,567
Number of Sequences: 336
Number of extensions: 3678
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)