Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P17
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             28   1.6  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   6.4  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   6.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.5  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   8.5  

>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 366 EFKDEWEVVNYVPLPKICPSDRSRVM---VTQFLTEKLEKFSILAYFRLCFMVGEYRLNF 536
           EF  +  VV+ +  PK+C +   +V    V + + + L+  +     +L +    Y+  F
Sbjct: 207 EFTIDPSVVSAIQDPKVCKAFEKKVSKERVGEEIEKMLKGANAKLALQLLYSTNTYQFTF 266

Query: 537 DYTPAER 557
           D  PAE+
Sbjct: 267 DTLPAEK 273


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 455 ELRYHNSRTVAWTYLWKGHVVYNLPFVFEFFN 360
           EL+  NS T+   + W   V+YN   +F F N
Sbjct: 85  ELKKPNSSTIKPCFTWANSVLYNDILIFIFAN 116


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 VQDVNSLRESL-DILEKWLQKQPHLAEGSKYLSPANLERAFITAKGS 281
           ++DV S   SL ++L++  QKQ  +    +Y +  +LER  I++ GS
Sbjct: 260 IKDVESYAHSLKELLKRRDQKQQDVEALQEYSAKLSLERDKISSGGS 306


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 320 ISRYDARIVFE*NR*RIQR--RMGGCKLRAPSKDMSKRPFESYGNA 451
           +S YD R++   N   +Q    + GC+ +     +SKRPF S   A
Sbjct: 269 MSEYDVRVLNFLNESTLQEIVEVSGCESKVVEYFISKRPFPSLEKA 314


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 132 ELYGVQDVNSLRESLDILEKWLQKQ-PHLAEG 224
           E +GVQ +NS+  S + L K LQ    HL +G
Sbjct: 96  EKHGVQAINSIPSSEEFLRKNLQNDIHHLVKG 127


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 531 NFDYTPAERFIIDFKNIHIGLLIKINPVVVKKAEVL 638
           +F ++P ER      N+ IGL   + P + KKA  L
Sbjct: 149 HFQFSPLER-----TNLLIGLTTSVKPTLAKKASAL 179


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 VQDVNSLRESLDILEKWLQKQPHLAEGSKY 233
           V   NSL+  L    +  ++ PHL  G KY
Sbjct: 32  VNGSNSLKRGLHFDGEHTERDPHLGNGQKY 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,189
Number of Sequences: 5004
Number of extensions: 61533
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)