Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P17
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420     31   0.72 
09_03_0051 + 11902322-11903125                                         28   8.8  
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    28   8.8  
03_05_0988 - 29458789-29459776,29459875-29460035,29460134-294602...    28   8.8  
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524...    28   8.8  

>04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420
          Length = 222

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 156 NSLRESLDILEKWLQKQPHLAEGSKYLSPANLERAFITAKGSVEETKRRLER 311
           +SLR SL ++ +W+   P  A     L  A LE A + ++G   E    L R
Sbjct: 55  SSLRGSLPLVRRWVPSPPPRARVDSALRAAGLEDAAVLSRGQFREFAAELFR 106


>09_03_0051 + 11902322-11903125
          Length = 267

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 123 KARELYG-VQDVNSLRESLDILEKWLQ--KQPHLAEGSKYLSPANLERAFITAKGSVEET 293
           KA EL    QD    R+ LD +  + Q  K+P   E     S  + E   + A+   E+ 
Sbjct: 175 KAEELVAEFQDDEQRRQRLDSIFNYTQMLKRPSPTEEGARRSEVDAEAEELVAELPDEQR 234

Query: 294 KRRLERMFTSRGMMPE 341
           +RRL+ +F    M+ +
Sbjct: 235 RRRLDSIFNYTQMLKQ 250


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 361 TVLFKHNSGIIPRDVNIXXXXXXXXSTEPFAVI 263
           T LFKHNS +I +D+N+          EP  ++
Sbjct: 116 TRLFKHNSTVIVKDLNLKSKHKKGTEDEPGEIV 148


>03_05_0988 -
           29458789-29459776,29459875-29460035,29460134-29460271,
           29460367-29460543
          Length = 487

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 171 SLDILEKWLQKQPH 212
           S D+LE+WL+K PH
Sbjct: 61  SFDLLEEWLEKNPH 74


>02_01_0701 +
           5238179-5238461,5238540-5238949,5240413-5240793,
           5241112-5241244,5241495-5241622,5241714-5241914
          Length = 511

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 297 RRLERMFTSRGMMPELCLNRTVEEFKDEWEVVNYVPLPKICPSDRSR 437
           RRL      RG++ ++   R V +F +EW ++NY   P      R +
Sbjct: 147 RRLTLTEARRGLVGDVGSVRRVFDFLEEWGLINYGASPSGAKQGRDK 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,617,944
Number of Sequences: 37544
Number of extensions: 362218
Number of successful extensions: 1009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)