Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P17
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027)            32   0.42 
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)               31   0.73 
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_53968| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     30   1.7  
SB_52544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)         29   3.9  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_30262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       28   6.8  
SB_45738| Best HMM Match : DUF501 (HMM E-Value=2.2)                    28   9.0  
SB_50075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_30219| Best HMM Match : DUF501 (HMM E-Value=8.4)                    28   9.0  

>SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027)
          Length = 499

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 135 LYGVQDVNSLRESLDILEKWLQKQPHLAEGSKYLSPANLERAFITAKG 278
           L G ++  +  + L  LEK L+K PH+AE  K +  AN+++ ++   G
Sbjct: 329 LLGRENKEAAMKRLVSLEKQLKKPPHIAEKYKEVLEANVKKGYVRKIG 376


>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
          Length = 704

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = +3

Query: 297 RRLERMFTSRGMMPELCLNRTVEEFKDEWEVVNYVPLPKIC-------PSDRSRVMVTQF 455
           +R+  +F  R    E+  +  V+EF+ EWEV+  +  P I        P +RS V++T+ 
Sbjct: 45  KRIHNIFFERDYGQEV-RDHYVQEFRREWEVLRTLEHPNIVEMQTVLFPPNRSPVIITEL 103

Query: 456 LTEKLE 473
           L+  LE
Sbjct: 104 LSCDLE 109


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = +3

Query: 153 VNSLRESLDILEKWLQKQPHLAEGSKYLSPANLERAF---ITAKGSVEETKRRL 305
           V+S    L+ +E+ LQK P LA+G K    A +E+ F   ++ +  VE+T++ L
Sbjct: 561 VDSALSRLESVERRLQKDPELAQGYKKAISAYVEKGFARKLSDEERVEDTEQWL 614


>SB_53968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 613 TGLILINRPMCIFLKSIINLSAGV*SKFSLYSPTMKQSLKYANMLNFSSFSVRNCVTITL 434
           TG++L    +C   + I  +S GV S F+ +   + QSLKY      + + +R    + L
Sbjct: 7   TGMLLSGSWVCF--EDIDLVSPGVLSLFAQHLNKIHQSLKYVVRAIDNQYGIRGVPQVRL 64

Query: 433 ERSLGHI 413
               GHI
Sbjct: 65  TNPTGHI 71


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 613 TGLILINRPMCIFLKSIINLSAGV*SKFSLYSPTMKQSLKYANMLNFSSFSVRNCVTITL 434
           TG++L    +C   + I  +S GV S F+ +   + QSLKY      + + +R    + L
Sbjct: 7   TGMLLSGSWVCF--EDIDLVSPGVLSLFAQHLNKIHQSLKYVVRAIDNQYGIRGVPQVRL 64

Query: 433 ERSLGHI 413
               GHI
Sbjct: 65  TNPTGHI 71


>SB_52544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 150 DVNSLRESLDILEKWLQKQPHLAEGSKYLSPANLERAF 263
           ++ S    L+ +E+ LQK P LA+G K    A +E+ F
Sbjct: 17  EIPSALSRLESVERRLQKDPELAQGYKKAISAYVEKGF 54


>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
          Length = 1012

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +3

Query: 174 LDILEKWLQKQPHLAEGSKYLSPANLERAF---ITAKGSVEETKRRL 305
           L+ +E+ LQK P LA+G K    A +E+ F   ++ +  VE+T++ L
Sbjct: 378 LESVERRLQKNPELAQGYKKAISAYVEKGFARKLSDEERVEDTEQWL 424


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +3

Query: 174 LDILEKWLQKQPHLAEGSKYLSPANLERAF---ITAKGSVEETKRRL 305
           L+ +E+ LQK P LA+G K    A +E+ F   ++ +  VE+T++ L
Sbjct: 322 LESVERRLQKDPELAQGYKKAISAYVEKGFARKLSDEERVEDTEQWL 368


>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 375 DEWEVVNYVPLPKICPSDRSRVMVTQFLTEKLEKF 479
           +EW     +P P++ P   S+  +T+ +TE  E F
Sbjct: 140 NEWHATEPIPFPEVPPEVLSKANITEQITEMREWF 174


>SB_30262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +3

Query: 168 ESLDILEKWLQKQPHLAEGSKYLSPANLERAFITAKGSVEETKRRLERMFTSRGMMPELC 347
           E++D+L K LQK P    G+K          F  A    +  ++R+   F  R +  EL 
Sbjct: 206 EAIDLLHKLLQKDPKKRLGAKGAHELK-AHPFFKAFDWADLAEKRIPAPFKPR-IRDELD 263

Query: 348 LNRTVEEFKDEWEVVNYVPLPK 413
           ++   EEF D     +   +PK
Sbjct: 264 VSNFSEEFTDMAPTYSPAAVPK 285


>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 455 ELRYHNSRTVAWTYLWKGHVVYNLPFVFEFFNGSI 351
           + RY    +  WTY+   H  ++L  + E+F+ S+
Sbjct: 182 DYRYFQDLSAVWTYIQTLHKEFDLVLIMEYFDESM 216


>SB_45738| Best HMM Match : DUF501 (HMM E-Value=2.2)
          Length = 430

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 174 LDILEKWLQKQPHLAEGSKYLSPANLERAF 263
           L+ +E+ LQK P LA+G K    A +E+ F
Sbjct: 128 LESVERRLQKDPELAQGYKKAISAYVEKGF 157


>SB_50075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 57  SNLAMEKLPYHPL--VIVTQEDLQKARE-LYGVQDVNSLRESLDILEKWLQKQPHLAEGS 227
           S+ +  K P+ P    I T + + KARE L+GV + ++ R   D+LE   +K     + S
Sbjct: 26  SSESTPKTPHFPNRHSIATDKRIIKARESLHGVGE-SAFRSFQDVLESMTEKHDRELQCS 84

Query: 228 KYLSPANL 251
             +SPA L
Sbjct: 85  VTVSPACL 92


>SB_30219| Best HMM Match : DUF501 (HMM E-Value=8.4)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 174 LDILEKWLQKQPHLAEGSKYLSPANLERAF 263
           L+ +E+ LQK P LA+G K    A +E+ F
Sbjct: 64  LESVERRLQKDPELAQGYKKAISAYVEKGF 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,384,740
Number of Sequences: 59808
Number of extensions: 436337
Number of successful extensions: 1217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)