Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P17
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    31   0.85 

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
 Frame = +3

Query: 105 TQEDLQKARELYGV--QDVNSLRESLDILEKWLQKQPHLAEGSKYLSPANLERAFITAKG 278
           T+E+++KA+E +    ++     E +  +EK L+K    ++   YL   ++ R+    + 
Sbjct: 733 TKEEVEKAKEEFQKVKEEFQKEVEKVKKVEKELEKAKE-SDFKVYLD--DVRRSLKNVRE 789

Query: 279 SVEETKRRLERMFTSRGMMPEL--CLNRTVEE 368
           ++EET++   R   S G MP    CL+  +E+
Sbjct: 790 TIEETRKYEIRFLDSLGFMPSSLDCLSNNLED 821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,711
Number of Sequences: 27780
Number of extensions: 344897
Number of successful extensions: 1085
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)