Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P16
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 29 0.54
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 28 1.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.6
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 5.0
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 8.7
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 8.7
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 8.7
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 29.5 bits (63), Expect = 0.54
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = +3
Query: 435 PEQPYPGVSILKPLTGVDPNLFSNLETFFLL-DYPTYELLFCVENEND----PAIMLVNS 599
PE P+ +I K L +P+ S E DY +L+FC N+ND NS
Sbjct: 461 PEDPFKH-AIYKLLGNCEPHRVSLPEVCVTSEDYMWIQLMFCRVNQNDVIDSNGGQSTNS 519
Query: 600 LLQKYPQVEARLFVGGLNVGVNPKINNMQQGYIAA 704
L Y Q+E ++ G NPK NN Y A
Sbjct: 520 LFNLY-QLEKKIVAFGPRY-FNPK-NNTPTNYFLA 551
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 531 YPTYELLFCVENENDPAIMLVNSLLQKYPQVEARLFVGGLNVGVNPKINNMQQ 689
Y ++ E N A + +LL P V A LF+G N + +N MQQ
Sbjct: 469 YQNQRVMIFTEFRNT-AEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQ 520
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 486 DPNLFSNLETFFLLDYPT-----YELLFCVENENDPAIMLVNSLLQKYPQVEARLFVGGL 650
D N+F NL++ +LD T +E L C ENEN + L S + Y L L
Sbjct: 1086 DQNIFDNLQSIKMLDLTTCINGIFESL-CSENENTRSNAL--SCIDHYLNAHKMLLNTTL 1142
Query: 651 NVGVNPKINNM 683
++ P N+
Sbjct: 1143 DISKLPSFQNL 1153
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +3
Query: 408 LHRTVDRSPPEQPYPGVSILKPLTG-VDPNLFSNLETFFLLDYPTYELLFCVENENDPAI 584
+H+ + R+PP +P P + ++ + + P + S LE F P E E +
Sbjct: 260 IHQILLRTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRA--PVLEAYAMTEASHQMTT 317
Query: 585 MLVNSLLQKYPQVEARLFVGGLNVGVNPKINNMQQG 692
+ L+ K P + F L + ++ K N M QG
Sbjct: 318 NPLPPLVHK-PHSVGKPFGVELKI-LDQKGNEMPQG 351
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = -3
Query: 672 SSGSLRHSVRRRTSELPLGDTSVGDCSLTL*PDRFRSQHKTKVRTSDSRVKRKSLDSRKG 493
S+ R SV R S+ +TS + + ++ +S +R DSRK
Sbjct: 1274 SAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDSRK- 1332
Query: 492 SDLHR*AASRSTRPGK--AVRAATGP 421
LHR + S+R K ++ + TGP
Sbjct: 1333 -SLHRHLSRSSSRASKKPSIVSTTGP 1357
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 417 TVDRSPPEQPYPGVSILKPLTGVDPNLFS 503
T+DR+ E P +S+ PLT + P+ FS
Sbjct: 371 TIDRTGVEAPLFELSVSMPLTLIPPSKFS 399
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 658 PTFSPPTNKRASTWGYFCRR 599
PTF P N+R TW Y RR
Sbjct: 42 PTFKPVVNERCGTW-YVNRR 60
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 528 DYPTYELLFCVENENDPAIMLVNSLLQKYPQVEARLFVGG 647
DYP + VE++N M + LL PQ + VGG
Sbjct: 416 DYPDEDASAIVESQNLDIRMRITPLLTGIPQPDRVYVVGG 455
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 80 CEQHDNHXAVRRTXTIGS 27
CEQH H +RR+ ++GS
Sbjct: 257 CEQHPAHANLRRSVSLGS 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,464
Number of Sequences: 5004
Number of extensions: 63378
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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