Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P16
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    29   5.2  
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134...    29   5.2  
08_02_1195 - 25149891-25151402,25152194-25152493                       28   9.1  
06_01_0156 + 1171717-1174140                                           28   9.1  
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448...    28   9.1  

>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 611 VSPSGSSLVRRRTECRSEPEDQQHATRIYRRQIPSYRNKRRRDPNA 748
           VSPS S   RRR+     P ++  A   Y  Q P   + R R   A
Sbjct: 265 VSPSPSGRSRRRSSAPVTPSEKNKAASPYSPQCPRTPSNRERSSRA 310


>04_03_0572 +
           17310729-17310746,17312209-17312902,17312991-17313400,
           17325755-17326063
          Length = 476

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 667 GFTPTFSPPTNKRASTWGYFCR 602
           G+TPT SP  NK    W  +CR
Sbjct: 361 GYTPTPSPSHNKTGLPWTSYCR 382


>08_02_1195 - 25149891-25151402,25152194-25152493
          Length = 603

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 342 FIVAWICLWLIHIMALSY 395
           F VA  C+WL+H++A S+
Sbjct: 526 FFVASKCIWLLHLLAFSF 543


>06_01_0156 + 1171717-1174140
          Length = 807

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 294 IIMIPIVYT-VYGFALFFIVAWICLWLIHIMALSYCKWK 407
           ++ + +VY  V+ F +F +  W  + L+H  A S  +W+
Sbjct: 454 LLFLVLVYEEVWEFVVFLLSNWFMVSLLHAYASSNARWR 492


>01_01_0602 -
           4484972-4485450,4485949-4485997,4486108-4486237,
           4486636-4486778,4486819-4486877,4487167-4487200,
           4487489-4487629,4487719-4487907,4488027-4488122,
           4488163-4488225,4488588-4489097
          Length = 630

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 546 VRTSDSRVKRKSLDSRKGSDLHR*AASRSTRPGKAVRAATGPPS 415
           ++T  SR+ + +  SR+ S +     S+ST  GKA    +  PS
Sbjct: 539 LQTKSSRIVKDTTSSRRRSPIRSQPRSKSTSSGKAKPVRSAKPS 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,185
Number of Sequences: 37544
Number of extensions: 413989
Number of successful extensions: 1157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)