Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P16
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 30 2.3
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8) 29 5.3
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 28 7.0
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59) 28 7.0
SB_24380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 566 RKRSGYNVSEQSPTEVSPSGSSLVRRRTECRSEPEDQQHATRIYRRQIPSYRNKRRRDPN 745
RKR + E+ P+ P S R R PED++ + R P R RRR P+
Sbjct: 1046 RKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPS 1105
Query: 746 A 748
A
Sbjct: 1106 A 1106
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/95 (26%), Positives = 38/95 (40%)
Frame = +2
Query: 407 TSQDGGPVAARTALPGRVDLEAAHRCRSEPFLESRDFLFTRLSDVRTFVLC*ERKRSGYN 586
+S+ GPV+ + PG V L + E R SD + V K+
Sbjct: 1089 SSKTSGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVSSGPSKKQ--R 1146
Query: 587 VSEQSPTEVSPSGSSLVRRRTECRSEPEDQQHATR 691
+SPTEV PS + R + + P +Q +R
Sbjct: 1147 RGRESPTEVPPSFRNTTRNKKDAGGSPSEQATNSR 1181
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/72 (22%), Positives = 26/72 (36%)
Frame = +2
Query: 2 GRPLCVSSNCQWCXCASPRXGCRAAHKKSLAXPIPNAQKLSSTRAXKCCFVFRGAHSSGC 181
G+ + V C P C L N Q + + + KCCF+ + C
Sbjct: 273 GKLIAVDKPCVMKYHTVPHAFCGRESYDPLRYRCCNHQHIYNPKTSKCCFIHVIPLDAAC 332
Query: 182 LVFIICSV*YYD 217
+ + C +YD
Sbjct: 333 IKLLQCGKKFYD 344
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 569 KRSGYNVSEQSPTEVSPSGSSLVRRRTECRSEPE 670
++S Y+ + +PTE PSG SL RR+T R+ E
Sbjct: 1172 RKSSYSDHKTTPTEHVPSGDSL-RRKTSSRNRHE 1204
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/72 (22%), Positives = 26/72 (36%)
Frame = +2
Query: 2 GRPLCVSSNCQWCXCASPRXGCRAAHKKSLAXPIPNAQKLSSTRAXKCCFVFRGAHSSGC 181
G+ + V C P C L N Q + + + KCCF+ + C
Sbjct: 273 GKLIAVDKPCVMKYHTVPHAFCGRESYDPLRYRCCNHQHIYNPKTSKCCFIHVIPLDAAC 332
Query: 182 LVFIICSV*YYD 217
+ + C +YD
Sbjct: 333 IKLLQCGKKFYD 344
>SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)
Length = 201
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 430 RRPNSLTRACRS*SRSPV*IRTFSRI*RLSFYSTIRRTNFCFVLRTKTIR 579
RRP++ T CR + P+ RTF S +S R+T+ +V R K +R
Sbjct: 36 RRPDNATNECRRKAEKPLAPRTF------SIFSRKRQTSNLWVSRGKALR 79
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 691 PCCMLLIFGFTPTFSPPTNKRASTWGYFCRRLFTNII 581
P LL+F P F+P + RAS W R +T II
Sbjct: 825 PLAALLVFAAPPLFAPKSRVRASPWA-CTRPAYTLII 860
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 393 YCKWKLHRTVDRSPPEQPYPGVSILKPLTGVDPNLFSNLETFFLLDYPTYELLFCVE 563
Y W L R ++ +Q PG +TGV P S +E F + P + VE
Sbjct: 638 YGAWLLARLIECEADKQVVPGFGGFVSVTGVKPPRKSTIEYFTQIHQPFTKYAVIVE 694
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 593 EQSPTEVSPSGSSLVRRRTECRSEPEDQ 676
E++PT PS S + EC+ EP ++
Sbjct: 498 EETPTPAQPSESQETEEQQECKEEPTEE 525
>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
Length = 483
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 691 PCCMLLIFGFTPTFSPPTNKRASTW 617
P LL+F P F+P + RAS W
Sbjct: 346 PLAALLVFAAPPLFAPKSRVRASPW 370
>SB_24380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 156 KTKQHXXARVDESFWAFGIGXAXDFL*AARQPXRGEA 46
K +H A + W G+G + +FL A +P R +A
Sbjct: 29 KNSKHAAAIFERKNWEGGLGTSTEFLRDALKPLRRDA 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,705,312
Number of Sequences: 59808
Number of extensions: 498218
Number of successful extensions: 1497
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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