Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P14
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 33 0.062
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 30 0.43
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 28 1.3
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 4.0
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 26 5.4
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 5.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 7.1
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 7.1
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 25 9.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 9.4
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 32.7 bits (71), Expect = 0.062
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 442 SWYSDLMDSRGDPRVKDWPMMS-----SPWPTLAACVCYAYCAKELGPKLMANRKPFELR 606
SW + L D+ R + + S P +A + Y +G ++M NR+P L+
Sbjct: 6 SWLNSLADATFGKRPSSFEFIVNKTRFSSAPVVATIIISYYLLILVGGRIMRNRQPIRLQ 65
Query: 607 NILVVYNMAQTIFSA 651
I YN+ +I SA
Sbjct: 66 KIFQYYNLTFSIASA 80
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 29.9 bits (64), Expect = 0.43
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 508 SPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFS 648
S W ++ + Y G +M NRKP + R + ++N TI S
Sbjct: 53 SQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIIS 99
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 159 ITELKQYILGKTSVSYFITYISHQEIESYSNRRF 260
+ LK Y+ G T++ +F+TY + I + + F
Sbjct: 211 MNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGF 244
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 541 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 657
+A A P + + F L+NI+V+ N ++ AWI
Sbjct: 12 FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 611 IFRSSNGFRLAISLGPSSFAQYA*HTHAARVGHGDDIIGQSF 486
+FRSS+ F S P SFAQ+ T + G+D++ ++F
Sbjct: 241 VFRSSH-FSTMYS-NPDSFAQFTLVTDSGYARTGEDVVWETF 280
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 643 FSAWIFYEYLMSGWWGHYDFRCQL 714
F+ +IFYEYL W ++ C L
Sbjct: 4 FNDYIFYEYLKKTNWNIHNLYCNL 27
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 488 FTRGSPLLSIKSLYQLETVAIFVSYHQLLYRTI*YHRKTG 369
+TR S L+ S+Y + +A+ + Y RTI RKTG
Sbjct: 397 YTRDSSALAFLSMYVIVDMAVLLCY--AFVRTIQIIRKTG 434
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 492 LADDVIAVANPSRVRVLRILREGAWPQ---TYGQSKTIRTSKYSRRLQHGSD 638
L + AVANP V V IL E + Q +G+SK S LQ +D
Sbjct: 481 LVEGYPAVANPEGVEVFEILDEMFFQQFTNVFGESKHFNKENVSWALQLVND 532
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 589 KPFELRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYD 699
KPF + + Y + F W+ Y+++ W Y+
Sbjct: 460 KPFAAGDFVDAYILLPLFFVIWLSYKFIKKTKWVSYE 496
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 543 RILREGAWPQTYGQSKTIRTSKYSRRLQHGSDYLQ 647
+IL +G W Y SKT +S+ L +D+L+
Sbjct: 318 QILEKGLWVSKYAPSKTQDCCAFSQCLSKIADWLR 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,299
Number of Sequences: 5004
Number of extensions: 53055
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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