Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P14
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    31   1.4  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    30   2.4  
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...    29   4.2  
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984...    28   7.4  
04_01_0136 + 1522008-1522179,1522528-1522608,1522646-1523174,152...    28   7.4  

>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 613 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVXYSRSPMAMRMANT 759
           +++ N+  TIF+   + E L   WWG   F C +  +   P+ +  A T
Sbjct: 451 ILIANIGTTIFACEYYNEELQLPWWGVL-FACSIAFFFTLPIGIIKATT 498


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 613 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVXYSRSPMAMRMANT 759
           +++ N+A TIF+   + E L   WWG     C +  +   P+ +  A T
Sbjct: 448 ILIANIAVTIFACEYYIEQLQLPWWGVL-LACAIAFFFTLPIGIITATT 495


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +3

Query: 468 QGRSSGERLADDVIAVANPSRVRVLRILREGAWPQTYGQSKTIRTSKYSRRLQHGSDYLQ 647
           Q  S GE+  +  I + N S+   + ++ EG+ PQ + +  T  ++K +    HG+ + +
Sbjct: 735 QALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSA---MHGNSFER 791

Query: 648 RLDILR 665
           RL I++
Sbjct: 792 RLSIVK 797


>09_02_0489 -
           9847903-9848081,9848916-9849107,9849195-9849276,
           9849529-9849722,9851009-9851601,9851827-9851870
          Length = 427

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 131 KKNDDKRCEXANXQNDKQNXEKRMIATHAGTTHRRRAAQASA 6
           +++DD  C  A  Q  +Q+   R  A  AG   RRR+  A+A
Sbjct: 74  RRDDDDGCGDAVDQQQRQSRRTRRGAAAAGCGCRRRSPTAAA 115


>04_01_0136 +
           1522008-1522179,1522528-1522608,1522646-1523174,
           1523301-1523616,1523653-1523847
          Length = 430

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 368 RQSSCDIRLFYKVI-GGNLRRWRPSQVGIVI*WTA 469
           RQ   D+ L Y+++  GNL R    +  +V+ WTA
Sbjct: 226 RQKKSDLFLVYELVDNGNLHRHLHEEAAVVLPWTA 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,157,914
Number of Sequences: 37544
Number of extensions: 364152
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)