Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P14
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)                    78   7e-15
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    48   9e-06
SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)                    29   3.2  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)
          Length = 278

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 32/70 (45%), Positives = 49/70 (70%)
 Frame = +1

Query: 457 LMDSRGDPRVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQ 636
           ++ S GDPR+ +WP++++PWP L+    Y +  K +GPK M NRK ++LR +LVVYN A 
Sbjct: 13  IVTSVGDPRLHEWPLIATPWPCLSLMAMYLFIVK-VGPKFMENRKAWDLRGVLVVYNFAL 71

Query: 637 TIFSAWIFYE 666
            + SA++ YE
Sbjct: 72  VLLSAYMVYE 81



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 607 NILVVYNMAQ----TIFSAWIFYEYLMSGWW-GHYDFRCQLVXYSRSPMAMRMANTCWWY 771
           N ++ Y++ Q    T+F    ++E++ S      ++  CQ V Y   P  MR+A  C+ Y
Sbjct: 100 NAILFYSIWQIHYLTLFVVDGYFEFIASILSIPEFNLMCQDVSYEEDPRLMRLARVCYIY 159

Query: 772 YFXK 783
           Y  K
Sbjct: 160 YLSK 163


>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = +1

Query: 463 DSRGDPRVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTI 642
           +S  DPR K+WP ++     +     Y   A   GP LM N+K F L+ I+V+YN   ++
Sbjct: 19  NSISDPRTKNWPFVNDVRVPIGLLFAYIL-AVLTGPHLMKNKKAFNLQWIMVIYNGMMSL 77

Query: 643 FSAWIFYE 666
            + +IF E
Sbjct: 78  LNLYIFLE 85


>SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)
          Length = 522

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 495 ADDVIAVANPSRVRVLR--ILREGAWPQTYGQSKTIRTSKYSRRLQHG 632
           ADD +A  +   +   R  I  E A  QTY QS T +TS Y +  +HG
Sbjct: 209 ADDSLAFESRDDILNTRPVIQVEDACNQTYNQSLTSKTSTYCKTNKHG 256


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 329 CDQGVPVFNKNTPRQSSCDI 388
           C QGV  F   T RQ+ CD+
Sbjct: 494 CGQGVCAFGSKTSRQTQCDV 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,766,024
Number of Sequences: 59808
Number of extensions: 404734
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)