Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P14
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    29   3.8  
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    29   3.8  
U61954-12|AAK29807.1|  274|Caenorhabditis elegans Fatty acid elo...    29   5.0  
U28943-4|AAA68358.1|  298|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical
           protein F11E6.5 protein.
          Length = 274

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +1

Query: 565 GPKLMANRKPFELRNILVVYNMAQTIFSAWIFYEYL 672
           G KLMA+RKPF+L+N L ++N   ++FS    Y+ +
Sbjct: 50  GQKLMAHRKPFDLQNTLALWNFGFSLFSGIAAYKLI 85


>Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 571 KLMANRKPFELRNILVVYNMAQTIFS 648
           K M NRKPF L+  L+++N A   FS
Sbjct: 71  KFMENRKPFTLKYPLILWNGALAAFS 96


>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 457 LMDSRGDPR--VKDWPMMSSPWPTLAACV 537
           ++DS  DP    K W     PW TLAACV
Sbjct: 782 MLDSARDPLNGQKWWMSSDEPWQTLAACV 810


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 457 LMDSRGDPR--VKDWPMMSSPWPTLAACV 537
           ++DS  DP    K W     PW TLAACV
Sbjct: 782 MLDSARDPLNGQKWWMSSDEPWQTLAACV 810


>U61954-12|AAK29807.1|  274|Caenorhabditis elegans Fatty acid
           elongation protein 6 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 535 VCYAYCAKELGPK-LMANRKPFELRNILVVYNMAQTIFS 648
           +  AY     G K +M NRKPF+L   L ++N    IFS
Sbjct: 36  ISMAYVVVIFGLKAVMTNRKPFDLTGPLNLWNAGLAIFS 74


>U28943-4|AAA68358.1|  298|Caenorhabditis elegans Hypothetical
           protein E04F6.3 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 717 YQLTPKVIVAPPSAHQILVEYPGAEDSLSHVVNDE 613
           +++ P  IVAP      L+++PG E  L  V++ E
Sbjct: 48  FKVLPSYIVAPGFQAHTLMDWPGVEFDLQRVLHGE 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,352
Number of Sequences: 27780
Number of extensions: 299739
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)