Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P14
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.61 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 508 SPWPTLAACVCYAYCAKELGPKLMANRK 591
           SP  T+A CVC   C +   P   +N K
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCASNGK 123



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 571 KLMANRKPFELRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYD 699
           K  +N++   +++ L++YN A+ +       EYL+S  + HYD
Sbjct: 204 KECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYD 246


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 427 MATVSSWYSDLMDSRGDPRVKDWPMMSSPWPTLAACVCYAYCA-KELGPKLMANRKPFEL 603
           +AT +S  +      G   V    + +  WP      CY YC  ++ G  L+ +++   L
Sbjct: 34  IATAASVVNACQTQTGVATVDIEAVRNGQWPETRQLKCYMYCLWEQFG--LVDDKRELSL 91

Query: 604 RNILVVY 624
             +L  +
Sbjct: 92  NGMLTFF 98


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 484 VKDWPMMSSPWPTLAACVCYAYCAKELG-PKLMANRKPFELRNILVVYNMAQTIFSAWI 657
           + DW  ++S WP L   +   + A EL   + + +R+  E   +  + N    ++ AWI
Sbjct: 430 LNDWYSLASSWPALVP-LALGFLAGELTYSQEIGDRQERESELVPYLENKGNGVY-AWI 486


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 113 RCEXANXQNDKQNXEK 66
           RC  +N QN+ QN  K
Sbjct: 416 RCAKSNNQNNNQNKYK 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,607
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)