Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P11
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   2.8  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   6.6  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   8.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = +1

Query: 25  AVPHTHSGAGCRPVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLTGNTPKSVTAAES 204
           ++P+T +     P+    C TS+    T   +P  S      S   +T +TP + T   +
Sbjct: 478 SIPYTSTPVTSTPLTTTNCTTSTSVPYT--STPVTSSNYTISSSTPVT-STPVTTTNCTT 534

Query: 205 *EENSRTLTHVTRFGQWTTWLTRKASIRY*ATCLQSTQLTLN 330
                 T T VT     TT  T   S+ Y +T + S+  T++
Sbjct: 535 STSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTIS 576


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 226 LTHVTRFGQWTTWLTRKASIRY*ATCLQSTQLTLNPLPWLKTGTSSYTPRLLKSM 390
           L  ++  G   TWL R  +I +     +S  L  +PL  + +GT S    LL+ +
Sbjct: 238 LDEISPAGPTHTWLVRDGTITHEVYTPESFHLQSHPLSSVASGTPSANAILLEEL 292


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 313 TQLTLNPLPWLKTGTSSYTPRLLKSMPNIHILMKPAFLVNQPPSPKP 453
           T   LNP P     T+   P +    P+I +  +PA  V  PP  +P
Sbjct: 547 TSQQLNPAP-----TAMPHPNITSPSPSISVTQRPAVNVGPPPYVRP 588


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 291  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 407
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 360 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 473
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 327 QSQLGALEARRSVSDGSLPCQPRSPLSEPCDV 232
           ++ L   E +RSV +GSLP   +  L+E  D+
Sbjct: 158 RAHLQVTEIQRSVENGSLPIDGKIVLNEKGDI 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,195
Number of Sequences: 5004
Number of extensions: 46001
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)