Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P11
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.24
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569... 31 0.74
09_03_0056 - 11936264-11939677 30 2.2
02_01_0695 - 5202091-5202498,5204103-5204588 29 3.9
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 28 6.9
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 6.9
04_04_0903 - 29269794-29270141,29270227-29270751 28 6.9
03_03_0256 + 15898702-15900420 28 6.9
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 28 6.9
12_02_1001 - 25162761-25162977,25163060-25163230,25163309-251638... 28 9.1
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 28 9.1
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 28 9.1
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 9.1
07_03_0113 - 13557496-13557960 28 9.1
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 28 9.1
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 28 9.1
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLYSKIAEEHAQHPH-PYETSVPRQSAAVAEA 452
P H A+ +A+A +HF L AE HA+ H ++ +P +AA A A
Sbjct: 291 PAPHLANITPIAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAA 341
>12_02_0380 -
18356210-18356329,18356415-18356673,18356754-18356917,
18357235-18357397,18357465-18359020
Length = 753
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 414 FHKDVDVG-HALQQSWSIAGSACL*PRQRIQSQLGALEARRSVSDGSLPCQPRS 256
F V++G H S S AG A + R + QSQLG+ + S +GSLP P S
Sbjct: 25 FADHVELGSHYAGDSSSEAGWAPMIARMQSQSQLGSNQLGVSFENGSLPDDPAS 78
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 347 FSQGNGFRVSWVLWRHVAQYRMEAFLVSHVVHCPNLVT-WVNVREFSSHDSAAV 189
F G+GF SW+L R+E+ +S CPN+ + ++ V SS S+ V
Sbjct: 913 FYMGSGFHPSWLLDDEPISSRLESLSIS---SCPNIASLFITVTGSSSRGSSPV 963
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 10 SQVNXAVPHTHSGAGCRPVPVAPCLTSSRPR 102
++ N A G GCRP P P +SSRPR
Sbjct: 207 TKANAAQSKAAGGGGCRP-PPPPSASSSRPR 236
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLY 368
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPPAQDRHAQFY 456
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 334 LPWLKTGTSSYTPRLLKSMPNIHILMKPAFLVNQPPSPKP 453
+P + G +P+ SMP +L PA L QPP P P
Sbjct: 500 MPSIPPGAPQLSPQGPSSMP---VLSSPAGLTTQPPYPLP 536
>04_04_0903 - 29269794-29270141,29270227-29270751
Length = 290
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 455 GGFGDGG*LTRNAGFIRMWMLGMLFSNLG 369
GG GDGG + AG + W L + + LG
Sbjct: 194 GGAGDGGGVVAEAGEVSKWKLALFGAALG 222
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 258 YVADKEGFHPILSDVPPEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSVP 425
Y AD G H + P P ++A ++ + +L SK E Q P P E P
Sbjct: 124 YAADPSGLHIVGDAQPSAEPDTVYNLAPSEHKRRRLQSKDEEGANQEPLPPEAKNP 179
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +1
Query: 25 AVPHTHSGAGCRPVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLTG---NTPKSVT- 192
A+P + A P P P L S P S +C P+ ++ P T N P SV+
Sbjct: 726 AIPQV-TPATISPAPSLPSLQSLAPSSGPQTSGSCVPVDIEWPPRKNTSSDFNAPLSVSE 784
Query: 193 AAES*EENSRTLTHVTRFGQWTTWLTRKASI 285
++S +S L + F W + ASI
Sbjct: 785 QSKSGGLSSDGLADIDPFADWPPKASSGASI 815
>12_02_1001 -
25162761-25162977,25163060-25163230,25163309-25163814,
25163827-25164195,25164283-25164729,25164808-25164833,
25164987-25165515
Length = 754
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLY 368
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPSAQDRHAQSY 456
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 195 SGVVRGKFAYVDPRH-KVRTVDYVADKEGFHPILSDVPPEHPADSESV 335
S V+G F Y+DP + K R + +D F +L +V PA +S+
Sbjct: 656 STAVKGSFGYLDPEYFKTRQLTDRSDVYSFGVVLFEVLCARPAIDQSL 703
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLY 368
PP+ PA + LA+DRH Q Y
Sbjct: 552 PPKRPASAPLAPLAQDRHAQSY 573
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLY 368
PP+ PA S S A+DRH Q Y
Sbjct: 588 PPKRPASSLSAPPAQDRHAQSY 609
>07_03_0113 - 13557496-13557960
Length = 154
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 303 PPEHPADSESVALAKDRHFQLY 368
PP+ PA + S A+DRH Q Y
Sbjct: 90 PPKRPASAPSAPPAQDRHAQYY 111
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 291 LSDVPPEHPADSESVALAKDRHFQLY 368
L PP+ PA + S A+DRH Q Y
Sbjct: 296 LGGSPPKRPASAPSAPPAQDRHAQSY 321
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 364 SWKCLSLAKATDSESAGCSGGTSLSIGWKPSLSAT*STVRTL*RGSTYAN 215
+W+C ++A + E G WKP + S RT R YAN
Sbjct: 115 NWQCYNIAPVAEKEKIFVDFGCLYVCHWKPLIWKFSSGKRTCARPMLYAN 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,022
Number of Sequences: 37544
Number of extensions: 356074
Number of successful extensions: 1445
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -