Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P11
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 30 1.7
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 3.0
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 3.0
SB_55244| Best HMM Match : YTV (HMM E-Value=2.8) 29 4.0
SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 29 4.0
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 4.0
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 7.0
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 28 9.2
SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39) 28 9.2
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11) 28 9.2
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 451 ASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS 272
+SA A R T+ + C++ + A + + KC S+ +AT + + C G T ++ K
Sbjct: 502 SSARTAMTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTK 560
Query: 271 -LSAT*STVRT 242
S T +TV T
Sbjct: 561 CYSVTRATVAT 571
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 242
C++ + A + + KC S+ +AT + + C G T ++ SAT +TV T
Sbjct: 561 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 613
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 447 RRRRLIDEERWFHKDVDVGHALQQSWSIAGSACL*PR--QRIQSQLGALEARRSVSDGSL 274
+RR + + ++ GHA Q W+ ++ R Q IQ + +R S G+L
Sbjct: 215 QRRASVPNIKIHTAPINPGHARQSQWARPANSSFPSRSLQDIQDGISFQTVKRRGSKGAL 274
Query: 273 PCQPRSP 253
P RSP
Sbjct: 275 PAIERSP 281
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 472 SSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSL 293
+++C+ V AT A C++ + A + + KC S +AT + + C T
Sbjct: 78 NTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCYSATRA 129
Query: 292 SIGWK-PSLSAT*STVRT 242
++ S SAT +TV T
Sbjct: 130 TVATNTKSYSATRATVAT 147
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 472 SSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSL 293
+++C+ V AT A C++ + A + + KC S +AT + + C T
Sbjct: 78 NTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCYSATRA 129
Query: 292 SIGWK-PSLSAT*STVRT 242
++ S SAT +TV T
Sbjct: 130 TVATNTKSYSATRATVAT 147
>SB_55244| Best HMM Match : YTV (HMM E-Value=2.8)
Length = 221
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 242
C++ + A + + KC S+ +AT + + C G T ++ K S T +TV T
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTKCYSVTRATVAT 64
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 242
C++ + A + + KC S+ +AT + + C G T ++ SAT +TV T
Sbjct: 54 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 106
>SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 303
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = -1
Query: 472 SSECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAG 314
+++C+ V AT A R T+ + C++ + A + + KC S+ +AT + +
Sbjct: 23 NTKCYSVTRATVATNTKCYGVTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTK 81
Query: 313 CSGGTSLSIGWKPS-LSAT*STVRT 242
C G T ++ SAT +TV T
Sbjct: 82 CYGVTRATVATNTKCYSATYATVAT 106
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 339 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 482
LAKD + + AEEHAQ ++ R + AV ++LK +++ RV
Sbjct: 125 LAKDDRYSTRTP-AEEHAQGGSIFDAYAGRGACAVVRSSLKTTDIRRV 171
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 339 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 482
LAKD + ++ +AEEHAQ ++ R + +V ++LK ++ RV
Sbjct: 405 LAKDDRYSTHT-LAEEHAQLRSKFDAYSGRGACSVVRSSLKTIDIRRV 451
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/104 (28%), Positives = 39/104 (37%)
Frame = +1
Query: 145 DXSPDTLTGNTPKSVTAAES*EENSRTLTHVTRFGQWTTWLTRKASIRY*ATCLQSTQLT 324
D T NTP S T E+ ++T T Q T T T +T
Sbjct: 793 DRQSQTTEANTPPSQTT-EAYTPPAQTTEANTPPAQTTEANTPPVQ----TTESYNTPTE 847
Query: 325 LNPLPWLKTGTSSYTPRLLKSMPNIHILMKPAFLVNQPPSPKPP 456
LP+ +T T S T + P P+ QPP+PKPP
Sbjct: 848 TTALPYQETSTESSTT----AQPTQPPTFAPSIAPTQPPTPKPP 887
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 61 PVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLTG 171
P+P AP + PR+T R+P P L +PD L G
Sbjct: 225 PLPPAPESPRANPRITSGRAPPKRP--LGSTPDNLDG 259
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 220 ANFPLTTPLPSLTSVCSLSTCPG 152
AN T LPSL CS TCPG
Sbjct: 187 ANNLNNTKLPSLCGACSNPTCPG 209
>SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 4 AVSQVNXAVPHTHSGAGCRPVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLT 168
+V N +P+T+ P C S RP L+++PT P SP T
Sbjct: 33 SVPNTNEPIPNTYEPIQTPKSPYQTCTGSQRPPRDLYQTPTI-PYPTPTSPQRAT 86
>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
Length = 704
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 31 PHTHSGAGCRPVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLTG-NTPKSVTAAES 204
P T S G P+ +TSS P L + T SP L SP ++T ++P+SV++ ES
Sbjct: 117 PPTQS-RGVSPLAPLSIITSSTPHLDFAATQT-SPGLGLASPHSVTRLSSPRSVSSQES 173
>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
Length = 1500
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 31 PHTHSGAGCRPVPVAPCLTSSRPRLTLHRSPTCSPILLDXSPDTLTG-NTPKSVTAAES 204
P T S G P+ +TSS P L + T SP L SP ++T ++P+SV++ ES
Sbjct: 1337 PPTQS-RGVSPLAPLSIITSSTPHLDFAATQT-SPGLGLASPHSVTRLSSPRSVSSQES 1393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,534
Number of Sequences: 59808
Number of extensions: 365745
Number of successful extensions: 1267
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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