Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P11
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.046
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   1.00 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   1.00 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 153 PGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTVDYVADKEGFHPILSDVPPEHPADSE 329
           P  VD E   VS GS       +Y  P  +  ++ YVAD+ GF    S +P   P   E
Sbjct: 60  PKQVDNETPVVSQGSD------SYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPE 112


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 WLTRKASIRY*ATCLQSTQLTLNP 333
           W+   ++ ++   CLQ TQL +NP
Sbjct: 72  WIGELSATKFGFPCLQYTQLPVNP 95


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 WLTRKASIRY*ATCLQSTQLTLNP 333
           W+   ++ ++   CLQ TQL +NP
Sbjct: 72  WIGELSATKFGFPCLQYTQLPVNP 95


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 396 HPHPYETSVPRQSAAVAEATL-KHSELFRVIAE 491
           HPHP ET  P+    +  A     +EL  ++ E
Sbjct: 466 HPHPPETPGPQVETILQNACFCARNELMMILKE 498


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 306 PEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSV 422
           P+H   S S + A      +Y  ++   A H H  + +V
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAV 107


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 82  LTSSRPRLTLHRSPTCSP 135
           +T ++ R+ L +SP C P
Sbjct: 197 ITPAKKRIKLEQSPLCPP 214


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 273 PCQPRSPLSEPCDVGQ 226
           P  P S  S PC+VGQ
Sbjct: 580 PEPPESVCSLPCEVGQ 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,531
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)