Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P08
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    28   0.77 
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   3.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    24   9.5  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 317 KDVPGAGLETTFVDDASLFTSISREK---FGHAGVFINHITITFLG*HFIYAPAEH 159
           K +  AG++TT + DA++F  +SR      G   +  N   +T+ G   +   A H
Sbjct: 247 KRLAQAGIDTTVISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQLVAQAARH 302


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 MKCQPRNVIVIWFMKTPACPNFSRLM 255
           +K  PR V+V W+  +P    FS L+
Sbjct: 94  LKANPREVVVGWYATSPDLDAFSALI 119


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 FNCRLAVRQKDVPGAGLETTFVDDASLFTSISREKFGHAGVFIN 213
           F   +  R+ D    G   +FVDD SL    + +  GH    +N
Sbjct: 413 FERSIEKRKNDYEVTGQSLSFVDDVSLTPDSAPKYAGHVVAVLN 456


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 201 NSDMVYEDSGMPELLPADARKKR 269
           N+ MV +D G P +L  D  KKR
Sbjct: 6   NAVMVRDDQGNPFILVRDQEKKR 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,734
Number of Sequences: 5004
Number of extensions: 28342
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)