Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P08
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0020 + 19873173-19873949                                         30   1.0  
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    28   4.0  
01_03_0158 + 13323191-13323436,13324052-13324102                       27   5.3  

>03_05_0020 + 19873173-19873949
          Length = 258

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 174 IDEMSAEKRNSDMVYEDSGMPELLPADARKKRGIIDECCLQACTRDV 314
           IDE+S + RN+  +   S M ELL  +      ++D   LQAC  ++
Sbjct: 20  IDEISRDTRNNTNIVMPSTMSELLQNERNVVPIVLDTNILQACENNL 66


>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 114 GSRRYCGRHLAQTMAVLCWGIDEMSAEKRNSDMVYEDSGMPELL 245
           G+R   G H+ +++  L   I ++S++KR+  + Y DS +  +L
Sbjct: 272 GARLKEGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRIL 315


>01_03_0158 + 13323191-13323436,13324052-13324102
          Length = 98

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 240 VRACRSLHKPYHYYVSRLTFHLC 172
           ++   +L  P H  V+RL FHLC
Sbjct: 57  IQTAMALKSPIHEVVARLRFHLC 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,178,153
Number of Sequences: 37544
Number of extensions: 199188
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)