Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P08
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)               31   0.45 
SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      30   1.0  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   28   3.1  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40)                     27   7.3  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)
          Length = 122

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +3

Query: 129 CGRHLAQTMAVLCWG----IDEMSAEKRNSDMVYEDSGMPELLPADARKKRG----IIDE 284
           CG  ++    ++C+G      +    +R+  +V       +      R KR     I +E
Sbjct: 48  CGDQISDAWTIICYGGGVTARQRQINRRDLSIVQSADEARQFNSKTQRGKRSSIYTITEE 107

Query: 285 CCLQACTRDVLLSYC 329
           CC++ C ++ +  YC
Sbjct: 108 CCVEGCKQEEIREYC 122


>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 539

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 341 NCRLAVRQKDVPGAGLETTFVDDASLFTSISREKFGHAGVFINH 210
           +C +    KDV G GL+ T +DD      I  + F  AG    H
Sbjct: 216 SCNIDTLVKDVDGTGLKKTKLDDVVNTCDICHKTFAQAGSLTIH 259


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 117 SRRYCGRHLAQTMAVLCWGIDEM 185
           S+ YCGRH A+T+   C   DE+
Sbjct: 127 SKVYCGRHHAETLKPRCAACDEI 149


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 258  RKKRGIIDECCLQACTRDVLLSYC 329
            R+KR I +ECC + CT   +   C
Sbjct: 1107 REKRNIHEECCKEGCTYHEIQEVC 1130


>SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 273 CLAFYEHQPGEVRA-CRSLHKPYHYYVSRLTFHLCPSRALP*SEL 142
           C  +Y H    +     SL   YH+Y    T+H CP +  P  +L
Sbjct: 381 CRHYYNHHQNLLLPQLSSLFNNYHHYQHHYTYH-CPGQQQPLKQL 424


>SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40)
          Length = 607

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 336 SSSSKTEGRPGCRLGDNIRR*CLAFYEHQPGEVRACRSLHK 214
           S S+  + + G  LGD +   C   Y+ +  E R CR + K
Sbjct: 406 SISNGQKRKTGTGLGDTVTYSCTQPYQRRGPETRTCRGIGK 446


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 378  FIEVVVKTFGYI*LSSSSKTEGRPGCRLGDN 286
            F+  V + FG    SSSS T  +PGCR   N
Sbjct: 1435 FVNSVEQNFGSAVRSSSSFTLPKPGCRKETN 1465


>SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +1

Query: 160  CSAGA*MKCQPRNVIVIWFMKTPAC------PNFSRLMLVKSEASSTNVVSKPAPGTSFC 321
            CS+GA +   PR+  ++W +K            F  L +   EA     V         C
Sbjct: 879  CSSGALIVANPRSDAIVWSLKNEQWGLDSFNSVFQNLPMASKEAQEIGKVLSDVTSNVTC 938

Query: 322  LTARR 336
            L AR+
Sbjct: 939  LVARQ 943


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,847
Number of Sequences: 59808
Number of extensions: 227952
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)