Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P08
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.89 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 304  VQAWRQHSSMMPRFLRASAGRSSG 233
            V AW  +S    RFLRA  G+SSG
Sbjct: 1022 VGAWA-YSKYGLRFLRAKPGKSSG 1044


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 284 FVDDASLFTSISREKFGHAGVFINHITITF 195
           +V+ + +F + S++ +GH     + I+ITF
Sbjct: 196 WVNSSEIFYTTSQQYYGHFAGNFSSISITF 225


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 95  HQNADGXHQQDDNNQLHG 42
           HQN+      DDN +L G
Sbjct: 399 HQNSPSIFISDDNQKLTG 416


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 124 LREPPNXCADTKMLTE 77
           + EPP  CAD+  + E
Sbjct: 311 ITEPPKNCADSGSIWE 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,844
Number of Sequences: 438
Number of extensions: 1992
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)