Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P07
         (646 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46; Panc...   143   4e-33
UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,...   139   5e-32
UniRef50_A3C1J1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_Q9LIR5 Cluster: Genomic DNA, chromosome 3, BAC clone:F1...    33   5.9  

>UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46;
           Pancrustacea|Rep: Troponin T, skeletal muscle -
           Drosophila melanogaster (Fruit fly)
          Length = 397

 Score =  143 bits (346), Expect = 4e-33
 Identities = 77/141 (54%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
 Frame = +3

Query: 225 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSX 404
           P    EGEGDPEFIKRQDQKRSDLD+QLKEYI EWRKQR+            QAKRKV+ 
Sbjct: 26  PQTPAEGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEEDELKKLKEKQAKRKVTR 85

Query: 405 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAXKKRQAMLQAMKDASKTGPN 584
                                       +IEEKR RLEEA KKRQAMLQAMKD  K GPN
Sbjct: 86  AEEEQKMAQRKKEEEERRVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMKDKDKKGPN 145

Query: 585 FTIQKKSEN-FGLSNAXLERN 644
           FTI KK     GLS+A +ERN
Sbjct: 146 FTIAKKDAGVLGLSSAAMERN 166


>UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,
           isoform G isoform 3; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to CG7107-PG, isoform G isoform 3 -
           Tribolium castaneum
          Length = 352

 Score =  139 bits (337), Expect = 5e-32
 Identities = 75/137 (54%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
 Frame = +3

Query: 237 QEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXX 416
           +EG GDPEFIKRQDQKRSDLDEQL+EYI EWRKQRA            QAKRK+S     
Sbjct: 31  EEGAGDPEFIKRQDQKRSDLDEQLREYITEWRKQRAKEEDELKKLKEKQAKRKISRAEEE 90

Query: 417 XXXXXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAXKKRQAMLQAMKDASKT-GPNFTI 593
                                   DIEEKRQRLEEA KKRQAM+QA+KD +K  GPNFTI
Sbjct: 91  RKMAERKKQEEERRIREIEEKKQRDIEEKRQRLEEAEKKRQAMMQALKDQNKNKGPNFTI 150

Query: 594 QKKSENFGLSNAXLERN 644
            K+  +  LS A LERN
Sbjct: 151 TKRDASSNLSAAQLERN 167


>UniRef50_A3C1J1 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 331

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   APAPPAAGQSRPGRRGLHIPTSLCCRSK 92
           AP PPAA +  P  RG H P   CCR +
Sbjct: 108 APPPPAAAREPPHGRGHHRPPRPCCRRR 135


>UniRef50_Q9LIR5 Cluster: Genomic DNA, chromosome 3, BAC
           clone:F14O13; n=2; Arabidopsis thaliana|Rep: Genomic
           DNA, chromosome 3, BAC clone:F14O13 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 224

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 222 KPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 341
           K   K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 17  KETSKDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,693,503
Number of Sequences: 1657284
Number of extensions: 5330446
Number of successful extensions: 23162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23138
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)