Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P07
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           30   1.4  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_15245| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   7.5  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   7.5  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     28   7.5  
SB_33268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +3

Query: 492 IEEKRQRLEEAXKKRQAMLQAMKDA 566
           +EE+R+RLE   K+RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 545  APGHE--RCQQDRTQLHHPKEERKLRFEQ 625
            APGH+  RC QD  +L+  K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 495  EEKRQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKSEN 611
            EE+RQ+ EEA K+R+  L A K++SK+      +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 225 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 344
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_15245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 6   RAPAPPAAGQSRPGRR--GLHIPTSLCCRSKXPV 101
           R   PP  G+SR G    G H+PTS+ C +  PV
Sbjct: 20  RGTVPPR-GESRCGAEPAGAHVPTSVKCENVYPV 52


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 426 RGAFLLRHEKPCAWPASL*GV 364
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +3

Query: 489 DIEEKRQRLEEAXKKRQAMLQAMKDASKTGPNFT 590
           ++EEK++RL+   + + ++ +A K+ASK+  + T
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT 460


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 489 DIEEKRQRLEEAXKKRQAMLQAMKD 563
           D+EEK + LEEA  + +A+   MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546


>SB_33268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 504 RQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAXLER 641
           R+ LEE   K+ A LQA  D      +  ++K S+  G S   LER
Sbjct: 5   REVLEELLDKKLAPLQASLDFLNDKYDIILKKVSDQEGKSKRTLER 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,145
Number of Sequences: 59808
Number of extensions: 174957
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)