Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P07
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    36   0.019
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    36   0.019
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    28   4.9  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +3

Query: 246 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 425
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 426 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKS 605
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 606 ENFGLSN 626
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +3

Query: 246 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 425
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 426 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAXKKRQAMLQAMKDASKTGPNFTIQKKS 605
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 606 ENFGLSN 626
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 3   SRAPAPPAAGQSRPGRRGLHIPTSLCCRSKXP 98
           S+ P PP+   S PGRRG   P +L   S  P
Sbjct: 505 SKMPPPPSPSPSTPGRRGRR-PRTLSTMSMEP 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,217
Number of Sequences: 27780
Number of extensions: 119394
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)