Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P06
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   2.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.9  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   4.9  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   8.5  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    25   8.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   8.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.5  

>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 275 PYCQPEQIHIAFGEKTNDIK-ITWSTFNDTQESTVEYGE 388
           P+ Q EQ+H+   +KTN+ K   +  F+D  ++   Y E
Sbjct: 345 PFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 GEKTNDIKITWSTFNDTQESTVEY 382
           GEK N ++  W+T  DT+ STV +
Sbjct: 554 GEKCNSVRYLWNTI-DTEFSTVSH 576


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 317 KTNDIKITWSTFNDTQESTVEYGEGIMEKEATGSA 421
           K NDI++ W+T    + + V+  E + EK    +A
Sbjct: 62  KKNDIRLFWNTQGFVRLAIVQLEENVSEKSVRSAA 96


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -2

Query: 627 AFLLPISPYIAARNNQSSPRGGVLKENSSDHPYTEPTW*TYLVLN-FKSFSRTVWIHWER 451
           A  LP   Y+ +R       G  L    S+  +  P   T    + F+  +R    +  +
Sbjct: 593 ASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQ 652

Query: 450 FSLPPSVNKVAEPVASFSIIPSPYS 376
           + + P+V  +A P+ +   +  P+S
Sbjct: 653 YGMSPTVGTIAYPIDTRETVQKPFS 677


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 113 KSNCDALLISERLRCTERT 57
           ++NC AL+ +ERL C + T
Sbjct: 352 RANCSALIETERLSCLQAT 370


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 588 NNQSSPRGGVLKENSSDHPYTEPT 517
           N++ S  GG + +N   +PY EPT
Sbjct: 847 NHRDSTVGGGILKNPKAYPYREPT 870


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 596 AIYGDMGNKNAHSLSYLQDEAERDHFDVIL 685
           AI   +GN + H + YL     + HF ++L
Sbjct: 548 AILKGLGNNHPHIVKYLDFVKTKHHFGIVL 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,512
Number of Sequences: 5004
Number of extensions: 61346
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)