Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P06
         (739 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131245-1|BAD18425.1|  438|Homo sapiens protein ( Homo sapiens ...   122   1e-27
AL445204-1|CAH71549.1|  458|Homo sapiens protein ( Human DNA seq...    31   5.7  
AL138914-1|CAH70702.1|  458|Homo sapiens protein ( Human DNA seq...    31   5.7  
AL136964-1|CAH72762.1|  458|Homo sapiens protein ( Human DNA seq...    31   5.7  

>AK131245-1|BAD18425.1|  438|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16165 fis, clone BRCOC2019841. ).
          Length = 438

 Score =  122 bits (294), Expect = 1e-27
 Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
 Frame = +2

Query: 275 PYCQPEQIHIAFGEKTNDIKITWSTFNDTQESTVEYG---EGIMEKEATGSATLFTDGGK 445
           P   PEQ+H+++  +   + +TW+T+  T+ S V++G    G +   A G+   F DGG 
Sbjct: 28  PSAAPEQVHLSYPGEPGSMTVTWTTWVPTR-SEVQFGLQPSGPLPLRAQGTFVPFVDGGI 86

Query: 446 EKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGEDWLLRAAIYGDMGNKN 625
            +R  +IH V L+ L    +YVY  GS  GWS  F F+    G  W  R A++GD+G  N
Sbjct: 87  LRRKLYIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRALKNGAHWSPRLAVFGDLGADN 146

Query: 626 AHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
             ++  L+ + ++  +D +LHVGDFAY++D ++ARVG
Sbjct: 147 PKAVPRLRRDTQQGMYDAVLHVGDFAYNLDQDNARVG 183


>AL445204-1|CAH71549.1|  458|Homo sapiens protein ( Human DNA
           sequence from clone RP11-232K22 on chromosome 13
           Contains the 3' end of a novel gene.  ).
          Length = 458

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 729 RASSVSMSYAKSPTWRITSKWSRSASSCKYDRE*AFLLPISPYIAARNNQSSPRGGVLKE 550
           R  ++ +  +  P WR+ + + + ASS +      F +  +  + ARN      GG  +E
Sbjct: 152 RGKALFLGNSAKPVWRLETCYPQGASSGQ-----CFTVENADAVCARNWSRGAAGGDGQE 206

Query: 549 NSSDHPYTEPTW-*TYLVLNFKSFSRTVWIHWERFSLPPSVN 427
             S HP   P W  +   L+F + S T+W  +   S P ++N
Sbjct: 207 VRSKHP--TPLWNLSDFYLSFCN-SYTLWELFSGLSSPNTLN 245


>AL138914-1|CAH70702.1|  458|Homo sapiens protein ( Human DNA
           sequence from clone RP11-15L1 on chromosome 13 Contains 
           part of a novel gene.  ).
          Length = 458

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 729 RASSVSMSYAKSPTWRITSKWSRSASSCKYDRE*AFLLPISPYIAARNNQSSPRGGVLKE 550
           R  ++ +  +  P WR+ + + + ASS +      F +  +  + ARN      GG  +E
Sbjct: 152 RGKALFLGNSAKPVWRLETCYPQGASSGQ-----CFTVENADAVCARNWSRGAAGGDGQE 206

Query: 549 NSSDHPYTEPTW-*TYLVLNFKSFSRTVWIHWERFSLPPSVN 427
             S HP   P W  +   L+F + S T+W  +   S P ++N
Sbjct: 207 VRSKHP--TPLWNLSDFYLSFCN-SYTLWELFSGLSSPNTLN 245


>AL136964-1|CAH72762.1|  458|Homo sapiens protein ( Human DNA
           sequence from clone RP11-346C4 on chromosome 13 Contains
            the 5' end of a novel gene, a novel gene and 2 CpG
           islands,.  ).
          Length = 458

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 729 RASSVSMSYAKSPTWRITSKWSRSASSCKYDRE*AFLLPISPYIAARNNQSSPRGGVLKE 550
           R  ++ +  +  P WR+ + + + ASS +      F +  +  + ARN      GG  +E
Sbjct: 152 RGKALFLGNSAKPVWRLETCYPQGASSGQ-----CFTVENADAVCARNWSRGAAGGDGQE 206

Query: 549 NSSDHPYTEPTW-*TYLVLNFKSFSRTVWIHWERFSLPPSVN 427
             S HP   P W  +   L+F + S T+W  +   S P ++N
Sbjct: 207 VRSKHP--TPLWNLSDFYLSFCN-SYTLWELFSGLSSPNTLN 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,782,861
Number of Sequences: 237096
Number of extensions: 2079330
Number of successful extensions: 4825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)