Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P06
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118497-1|AAM49866.1|  450|Drosophila melanogaster LD07917p pro...   174   1e-43
AE014298-1517|AAF47969.1|  450|Drosophila melanogaster CG1637-PC...   174   1e-43
BT024960-1|ABE01190.1|  458|Drosophila melanogaster IP15509p pro...   164   1e-40
AE014298-1519|AAF47971.2|  458|Drosophila melanogaster CG1637-PB...   164   1e-40
AE014298-1518|AAF47970.1|  453|Drosophila melanogaster CG1637-PA...   156   3e-38
AY058365-1|AAL13594.1|  517|Drosophila melanogaster GH13752p pro...    31   1.2  
AE013599-967|AAM71040.1|  517|Drosophila melanogaster CG1441-PB,...    31   1.2  
AE013599-966|AAF58875.1|  517|Drosophila melanogaster CG1441-PA,...    31   1.2  
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    30   3.8  
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran...    29   8.7  
AE013599-1459|AAM68673.2|  762|Drosophila melanogaster CG30049-P...    29   8.7  

>AY118497-1|AAM49866.1|  450|Drosophila melanogaster LD07917p
           protein.
          Length = 450

 Score =  174 bits (423), Expect = 1e-43
 Identities = 80/159 (50%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
 Frame = +2

Query: 269 DCPYCQPEQIHIAFGEKTNDIKITWSTFNDTQESTVEYGEGIMEKE---ATGSATLFTDG 439
           D  + QPEQ+H++FG+   DI +TWST +    S V++    ++ E     G+   F DG
Sbjct: 32  DIVHYQPEQVHLSFGDNLRDIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDG 91

Query: 440 GKEKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGEDWLLRAAIYGDMGN 619
           GK+ R+Q+IH V LKDL+ +TRY Y  GS  GWS +F+FKTPP GE W    AI+GDMGN
Sbjct: 92  GKKARTQYIHNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMGN 151

Query: 620 KNAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
           +NA S+  LQ + ER  +D I+HVGDFAYDMDT +A VG
Sbjct: 152 ENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVG 190


>AE014298-1517|AAF47969.1|  450|Drosophila melanogaster CG1637-PC,
           isoform C protein.
          Length = 450

 Score =  174 bits (423), Expect = 1e-43
 Identities = 80/159 (50%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
 Frame = +2

Query: 269 DCPYCQPEQIHIAFGEKTNDIKITWSTFNDTQESTVEYGEGIMEKE---ATGSATLFTDG 439
           D  + QPEQ+H++FG+   DI +TWST +    S V++    ++ E     G+   F DG
Sbjct: 32  DIVHYQPEQVHLSFGDNLRDIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDG 91

Query: 440 GKEKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGEDWLLRAAIYGDMGN 619
           GK+ R+Q+IH V LKDL+ +TRY Y  GS  GWS +F+FKTPP GE W    AI+GDMGN
Sbjct: 92  GKKARTQYIHNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMGN 151

Query: 620 KNAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
           +NA S+  LQ + ER  +D I+HVGDFAYDMDT +A VG
Sbjct: 152 ENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVG 190


>BT024960-1|ABE01190.1|  458|Drosophila melanogaster IP15509p
           protein.
          Length = 458

 Score =  164 bits (399), Expect = 1e-40
 Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 13/169 (7%)
 Frame = +2

Query: 269 DCPYCQPEQIHIAFGEKTN-DIKITWSTFN--DTQE----STVEYGEGI-----MEKEAT 412
           D  + QPEQ+H++FGE+T+ +I +TWST +    QE    S VEYG+ +     + ++A 
Sbjct: 32  DIVHYQPEQVHLSFGERTDSEIVVTWSTRSLPPDQEVGAVSVVEYGQLVDGQVRLTQQAR 91

Query: 413 GSATLFTDGGKEKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGE-DWLL 589
           G AT F DGG ++ +Q+IH V L+DL+ N  Y YH GS +GWS +F F+T P    DW  
Sbjct: 92  GKATKFVDGGHKQATQFIHRVTLRDLEPNATYSYHCGSDFGWSAIFQFRTVPSASVDWSP 151

Query: 590 RAAIYGDMGNKNAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
             AIYGDMGN+NA SL+ LQ E +R  +D I+HVGDFAYDM+T++ARVG
Sbjct: 152 SLAIYGDMGNENAQSLARLQQETQRGMYDAIIHVGDFAYDMNTKNARVG 200


>AE014298-1519|AAF47971.2|  458|Drosophila melanogaster CG1637-PB,
           isoform B protein.
          Length = 458

 Score =  164 bits (399), Expect = 1e-40
 Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 13/169 (7%)
 Frame = +2

Query: 269 DCPYCQPEQIHIAFGEKTN-DIKITWSTFN--DTQE----STVEYGEGI-----MEKEAT 412
           D  + QPEQ+H++FGE+T+ +I +TWST +    QE    S VEYG+ +     + ++A 
Sbjct: 32  DIVHYQPEQVHLSFGERTDSEIVVTWSTRSLPPDQEVGAVSVVEYGQLVDGQVRLTQQAR 91

Query: 413 GSATLFTDGGKEKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGE-DWLL 589
           G AT F DGG ++ +Q+IH V L+DL+ N  Y YH GS +GWS +F F+T P    DW  
Sbjct: 92  GKATKFVDGGHKQATQFIHRVTLRDLEPNATYSYHCGSDFGWSAIFQFRTVPSASVDWSP 151

Query: 590 RAAIYGDMGNKNAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
             AIYGDMGN+NA SL+ LQ E +R  +D I+HVGDFAYDM+T++ARVG
Sbjct: 152 SLAIYGDMGNENAQSLARLQQETQRGMYDAIIHVGDFAYDMNTKNARVG 200


>AE014298-1518|AAF47970.1|  453|Drosophila melanogaster CG1637-PA,
           isoform A protein.
          Length = 453

 Score =  156 bits (378), Expect = 3e-38
 Identities = 77/158 (48%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
 Frame = +2

Query: 269 DCPYCQPEQIHIAFGEKTNDIKITWSTFNDTQESTVEYG-EGIMEK-EATGSATLFTDGG 442
           D  + QPEQ+H++FGE   DI +TW+T ++T ES  E+G +G+ ++ +AT   T F DGG
Sbjct: 32  DIVHYQPEQVHLSFGETVLDIVVTWNTRDNTNESICEFGIDGLHQRVKATQMPTKFVDGG 91

Query: 443 KEKRSQWIHTVLLKDLKFNTRYVYHVGSVYGWSELFSFKTPPRGEDWLLRAAIYGDMGNK 622
            +K +Q+IH V L  LK N+ Y+YH GS  GWS  + F+T     DW    AIYGDMG  
Sbjct: 92  AKKATQYIHRVTLSHLKPNSTYLYHCGSELGWSATYWFRTRFDHADWSPSLAIYGDMGVV 151

Query: 623 NAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 736
           NA SL  LQ E +   +D I+HVGDFAYDMD E+  VG
Sbjct: 152 NAASLPALQRETQSGQYDAIIHVGDFAYDMDWENGEVG 189


>AY058365-1|AAL13594.1|  517|Drosophila melanogaster GH13752p
           protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 302 IAFGEKTNDIKITWSTFNDTQESTVEYGEGIMEKEATGSATLFTDGGKEKRSQWIHTVLL 481
           +A    +NDIK++W+         +E G  ++E +   +   +  GG  K + W+H + +
Sbjct: 329 VAHMTSSNDIKVSWAEI-------IELGRWVIENKVPLNGVAWYPGGSMKSNYWVHFICM 381


>AE013599-967|AAM71040.1|  517|Drosophila melanogaster CG1441-PB,
           isoform B protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 302 IAFGEKTNDIKITWSTFNDTQESTVEYGEGIMEKEATGSATLFTDGGKEKRSQWIHTVLL 481
           +A    +NDIK++W+         +E G  ++E +   +   +  GG  K + W+H + +
Sbjct: 329 VAHMTSSNDIKVSWAEI-------IELGRWVIENKVPLNGVAWYPGGSMKSNYWVHFICM 381


>AE013599-966|AAF58875.1|  517|Drosophila melanogaster CG1441-PA,
           isoform A protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 302 IAFGEKTNDIKITWSTFNDTQESTVEYGEGIMEKEATGSATLFTDGGKEKRSQWIHTVLL 481
           +A    +NDIK++W+         +E G  ++E +   +   +  GG  K + W+H + +
Sbjct: 329 VAHMTSSNDIKVSWAEI-------IELGRWVIENKVPLNGVAWYPGGSMKSNYWVHFICM 381


>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 525 LYTDGLSCFPSRLLREAKTGYC---GPLYTVIWAIKMLTPY 638
           +++D   CF SR L  A+T Y      +  +IWA++   PY
Sbjct: 524 VHSDRPVCFASRTLSAAETNYSTIEKEMLAIIWAVQYFRPY 564


>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +3

Query: 525 LYTDGLSCFPSRLLREAKTGYCG---PLYTVIWAIKMLTPY 638
           L  D   CF SR L + +  Y      +  +IWA+K   PY
Sbjct: 637 LQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPY 677


>AE013599-1459|AAM68673.2|  762|Drosophila melanogaster CG30049-PA
           protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 492 FKSFSRTVWIHWERFSLPPSVNKVAEPVASFSIIPS 385
           F+S     W+++++ S  P  + +AE +  F I+PS
Sbjct: 192 FQSGPNNPWLYYKQHSKHPFASTLAEEIFQFGILPS 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,579,769
Number of Sequences: 53049
Number of extensions: 639522
Number of successful extensions: 1578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)