Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_P05
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 244 5e-65
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 218 4e-57
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 192 3e-49
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 132 7e-36
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 146 1e-35
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.4
01_01_0796 + 6190931-6192745 29 4.5
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 28 5.9
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 7.8
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 244 bits (597), Expect = 5e-65
Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 1/186 (0%)
Frame = +1
Query: 121 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 297
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 298 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 477
GVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 110 GVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167
Query: 478 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSE 657
VPLYKH+ +LAG ++V+PVPAFNVINGGSHAGN LAMQEFM+ P GAS+FSE
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSE 227
Query: 658 XMRMGS 675
+RMGS
Sbjct: 228 ALRMGS 233
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 218 bits (532), Expect = 4e-57
Identities = 120/191 (62%), Positives = 140/191 (73%), Gaps = 8/191 (4%)
Frame = +1
Query: 124 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 300
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 301 VLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVS 462
V A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 463 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPTG 639
L +PLY+H+A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI PTG
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTG 181
Query: 640 ASTFSEXMRMG 672
A++F E M+MG
Sbjct: 182 AASFKEAMKMG 192
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 192 bits (467), Expect = 3e-49
Identities = 119/223 (53%), Positives = 142/223 (63%), Gaps = 36/223 (16%)
Frame = +1
Query: 112 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 288
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 289 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAI 450
GKGVL A+ N+N +I P L + T+Q +ID M++ LDGT N K KLGANAI
Sbjct: 60 LGKGVLKAVSNVNTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117
Query: 451 LGVSLXXXXXXXXXXNVPLYK---HLADLAGNNDIVLPVPAFNVINGGSHAGNKLAM--- 612
L VSL +PLY+ H+A+LAGN +VLPVPAFNVINGGSHAGNKLAM
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQVK 177
Query: 613 -----------------------QEFMIFPTGASTFSEXMRMG 672
QEFMI PTGAS+F E M+MG
Sbjct: 178 YCLNNKTMSMHDSVIFSAHLAAVQEFMILPTGASSFKEAMKMG 220
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 132 bits (319), Expect(2) = 7e-36
Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
Frame = +1
Query: 124 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 300
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 301 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 462
VL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 463 LXXXXXXXXXXNVPLYK 513
L +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 36.3 bits (80), Expect(2) = 7e-36
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 613 QEFMIFPTGASTFSEXMRMG 672
QEFMI PTGAS+F E M+MG
Sbjct: 138 QEFMILPTGASSFKEAMKMG 157
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 146 bits (354), Expect = 1e-35
Identities = 75/185 (40%), Positives = 109/185 (58%)
Frame = +1
Query: 121 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 300
VI S++ARQI D RG P VEV L T + RA+ + + A +RD K + +
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARA 105
Query: 301 VLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXX 480
V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L VS+
Sbjct: 106 VADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKA 163
Query: 481 XXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEX 660
VPLYKH+A+L G + LP+PA VINGG+HAGN L +QE MI P GA F E
Sbjct: 164 GAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGAKNFEEA 223
Query: 661 MRMGS 675
M+MGS
Sbjct: 224 MQMGS 228
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 202 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 345
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +1
Query: 202 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 381
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 382 EIDELMLKLDGTENK 426
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 565 KLVQVEQCHYFQPNQPSACTAEHSSWQHQ 479
+L+ V C++ +QP+AC+A+ S Q Q
Sbjct: 337 RLLPVASCYWPMKSQPTACSAQESLEQEQ 365
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 300 SLAMIFTLDVISQFKS-FMNTSGCTRGYSCPEQAKLC 193
SLA+ +DV+ + S + + + CT+G+ P +LC
Sbjct: 658 SLALPVAMDVVDEILSNYKSNAVCTKGHQFPRGNRLC 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,802
Number of Sequences: 37544
Number of extensions: 304759
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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