Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P05
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                  107   8e-24
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)              100   9e-22
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             42   5e-04
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         29   4.5  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.5  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   6.0  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  28   6.0  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            28   7.9  
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   7.9  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score =  107 bits (257), Expect = 8e-24
 Identities = 47/59 (79%), Positives = 53/59 (89%)
 Frame = +1

Query: 499 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEXMRMGS 675
           VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+ PTGAS F E MRMG+
Sbjct: 26  VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGASNFREAMRMGA 84


>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score =  100 bits (240), Expect = 9e-22
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = +1

Query: 202 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 381
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 382 EIDELMLKLDGTENK 426
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +1

Query: 568 NVINGGSHAGNKLAMQEFMIFPTGASTFSEXMRMGS 675
           N++NGG+HA + + +QEFMI P GA +F +    G+
Sbjct: 2   NILNGGAHADSDVDIQEFMIAPIGAESFKQAYEWGA 37


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 445 AILGVSLXXXXXXXXXXNVPLYKHLADL---AGNNDIVLPVPAFNVINGGSHAGNKLAM- 612
           A+LGVS+           + +++HLA+      +    +P+P   +++ G  A  K  M 
Sbjct: 112 AVLGVSMATVIAGSMLKKMEVFEHLANTFLEEPSGSQCMPLPVMTLLSSGKLASGKQNMI 171

Query: 613 QEFMIFP-TGAST 648
           +E +I P  G ST
Sbjct: 172 KEVLILPKPGEST 184


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 450 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNQFID 322
           + + T F      ++ +H F    + GY + GF KFRS Q +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 307 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 429
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 271 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 384
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 508 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMQE 618
           Y HL+ +   +D+ LPV  +N+ +G G   G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
 Frame = +1

Query: 193 TELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVT 372
           T  G+++   P      V+  LEL     +E  G  V+     +  LI  EL++AN+  +
Sbjct: 383 TGKGIYKKDGPFDVFIDVNNVLELHRT--TEVDGYFVVGGGVTLGSLI--ELSEANVSKS 438

Query: 373 QQ-REIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXX-XNVPLYKHLADLAGNNDI 546
              R I E +  +  T  ++++    ++G S+           NV        +A +  +
Sbjct: 439 PVFRAIAEHLKVVANTPVRNEVDGYFVVGGSVTLGSLIELSEANVSKSPVFPAIAEHLKV 498

Query: 547 VLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSE 657
           V   P  NV   GS AGN +   +   FP+   T  E
Sbjct: 499 VANTPVRNV---GSIAGNMMLAHDHSDFPSDIMTIME 532


>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 354 FGKFRSNQFIDIFDCGQNSLAMIFTLDVISQFKSFMNTSGCTRGYSC 214
           FG FR N+   +  CG +     +   + SQ        GC  GY+C
Sbjct: 316 FGDFRENKMTALMSCGHSFCTECWEFYLKSQISRGEGDIGCP-GYNC 361


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 307 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 453
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,273
Number of Sequences: 59808
Number of extensions: 355152
Number of successful extensions: 732
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)