Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_P04
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    28   1.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.4  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   6.4  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.5  

>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 220 MRNGYCSSQLGSRLFSQQCYAHG 152
           ++ G C +Q+GS+ + Q C  HG
Sbjct: 8   LQAGQCGNQIGSQFWQQLCLEHG 30


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 486 LNQLKLYQNTRQKLLKKVK 542
           LNQ+  YQ  R KLLK VK
Sbjct: 843 LNQVNYYQFIRNKLLKDVK 861


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 654 NALACTVGXMCVGASVDLASSDFGVVASSFLASVDELVSLFLAASVWCSGTI 499
           N L+ +V  +   A VDL+  D+GVV+ S    V ++    L  S  CS T+
Sbjct: 236 NPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTL 287


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 621 VGASVDLASSDFGVVASSFLASVDELVSLFLA 526
           +GA+  L++S  G+   S L +++ L SLF+A
Sbjct: 42  IGATSSLSNSSLGLPEYSNLFAINNLKSLFVA 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,042
Number of Sequences: 5004
Number of extensions: 37474
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)