Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O21
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...   120   3e-28
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    33   0.042
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.1  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   2.8  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   3.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.4  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.4  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score =  120 bits (288), Expect = 3e-28
 Identities = 58/111 (52%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
 Frame = +2

Query: 413 SSCRKVKEEVSKLLALKAQLV--TEDAGPQK---FTLKTPKGTRDYNPQQMTIRNNVLDK 577
           +S   + +EV+KLL LK   +  +E +G +K   FTLKTPKGT+D+  + + +R ++   
Sbjct: 27  ASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTSFTLKTPKGTKDWCDKDVVLREHIFST 86

Query: 578 IITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLXYD 730
           +  +F+RHG   +DTPVFELK++L+GKYGEDSKLIYDLKDQGGE+ SL YD
Sbjct: 87  VTEIFKRHGGVTLDTPVFELKEILSGKYGEDSKLIYDLKDQGGELCSLRYD 137


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +2

Query: 566  VLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLXYD 730
            V D ++ VFRRHGA+  ++ +   K   + +Y +D   +  L D+ G +L L YD
Sbjct: 990  VRDHVVKVFRRHGAKERESHILFPK---SSQYDKDQASV-SLLDKNGTLLQLPYD 1040


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 595 PKNCNNFIQYIITYCHLLWVVVSCSLWCFKSKL 497
           P+N   F+  II Y + +  ++ CSLW + +KL
Sbjct: 318 PQNLQPFVFMIIQYLYSITTMLPCSLW-YNNKL 349


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 554 IRNNVLDKIITVFR-RHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLXYD 730
           ++N VL  I++  +    ++      +E K +L  ++   +KL+  L   G EILS+ +D
Sbjct: 466 LKNAVLSSIVSTIQIEPNSDLTGYDYYEYKRLLYNEWERFAKLVAYLDHFGDEILSINFD 525


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 675 FESSPYFPVSTSFSSKTGVS 616
           F   P FPV+TS  +KT VS
Sbjct: 78  FSEEPLFPVTTSIPTKTAVS 97


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  CPAICSLTPALARFXLVKSRXF 129
           CP+ICS+T     F L+ SR F
Sbjct: 418 CPSICSVTEDYIWFQLILSREF 439


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 524  TRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDV--LTGKYGEDSKLI 682
            TRDY+ +Q+  R NV+  +++ F +  A+ ++ P   +K +  L G Y E   L+
Sbjct: 2511 TRDYHIKQVNNRPNVISTLVSSFVKCAAK-LELPPHLVKYLGKLYGVYHESVSLL 2564


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 276 IFITRPFLVPLIGILRCF*FSNK 208
           +FI+ PFLV LI  L  F  S+K
Sbjct: 857 VFISEPFLVQLISTLNLFITSSK 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,645
Number of Sequences: 5004
Number of extensions: 58394
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)