Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_O21
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 104 8e-23
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 47 1e-05
08_02_1100 + 24303920-24304001,24304080-24304576,24304745-243048... 31 1.2
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 28 8.8
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 28 8.8
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 28 8.8
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 28 8.8
02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132 28 8.8
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 28 8.8
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 104 bits (249), Expect = 8e-23
Identities = 47/74 (63%), Positives = 55/74 (74%)
Frame = +2
Query: 509 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYD 688
K PKGTRD+ +QM IR + I VF+ HGA +DTPVFEL++ L GKYGEDSKLIYD
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYD 510
Query: 689 LKDQGGEILSLXYD 730
L DQGGE+ SL YD
Sbjct: 511 LADQGGELCSLRYD 524
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 488 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 667
G + P+GTRD+ P+ M +R + D+ V R E +D PV E + + K GE
Sbjct: 65 GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRVMAFEEVDFPVLESEALFIRKAGE 124
Query: 668 D-SKLIYDLKDQGG 706
+ ++ +Y+ +D+GG
Sbjct: 125 EITQQLYNFEDKGG 138
>08_02_1100 +
24303920-24304001,24304080-24304576,24304745-24304842,
24304982-24305813,24306463-24306645,24306726-24307346
Length = 770
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -3
Query: 348 WVLKNVSNLCD---MLQ*YPFT*HHNDIFITRPFLVPLIGILRCF 223
W+L++VSN+CD + + P+T +D+F + ++G LR F
Sbjct: 581 WLLESVSNICDPAKLPEGSPWTCPGDDVFFNASIIWGVVGPLRMF 625
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 325 ITYIF*NPCNGKTIMQCSSEKLSDKK 402
+ +F PC+G+ I+ CS ++L KK
Sbjct: 185 VNAVFGLPCSGQLIIPCSQDELDGKK 210
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 325 ITYIF*NPCNGKTIMQCSSEKLSDKK 402
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 560 NNVLDKIITV----FRRHGAECID-TPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLX 724
+ +LD II V F+RH A+ +P+ L+ T G+ K++ QGGE+L L
Sbjct: 849 SELLDSIIEVSKEVFKRHCAKRFQISPLHTLEGKFTENRGKTVKIL----TQGGEMLELC 904
Query: 725 YD 730
Y+
Sbjct: 905 YE 906
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 325 ITYIF*NPCNGKTIMQCSSEKLSDKK 402
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
>02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132
Length = 224
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 325 ITYIF*NPCNGKTIMQCSSEKLSDKK 402
+ +F PC+G+ I+ CS ++L KK
Sbjct: 149 VNAVFSLPCSGQPIIPCSQDELDGKK 174
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 325 ITYIF*NPCNGKTIMQCSSEKLSDKK 402
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,795
Number of Sequences: 37544
Number of extensions: 335520
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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