Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O20
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.4  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   3.2  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.3  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 VRHGEEGDDPHIVEDRNRLKAKIDE 399
           +R  E+ +DPH+ E    L + IDE
Sbjct: 47  IRTSEDDNDPHVNEYVESLASIIDE 71


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 VRHGEEGDDPHIVEDRNRLKAKIDE 399
           +R  E+ +DPH+ E    L + IDE
Sbjct: 361 IRTSEDDNDPHVNEYVESLASIIDE 385


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 VRHGEEGDDPHIVEDRNRLKAKIDE 399
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 VRHGEEGDDPHIVEDRNRLKAKIDE 399
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 439 VAPSVSSSRGPSKPPVDAIXEPAVRN 516
           +A +V+S+ GPS+ P  +  E  +RN
Sbjct: 271 LASAVASANGPSQDPSISSTETLLRN 296



 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -1

Query: 145 KVQKQSDISRLYG--TTAEIWTGRXPR 71
           K+    D   LY   TTA  W GR P+
Sbjct: 17  KLLSCKDFDTLYRDCTTASSWPGRPPK 43


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 467 PREEDTEGATSNCGLSRTFMPM 402
           P EED  G  ++ G    ++PM
Sbjct: 39  PPEEDNRGCAASVGEGSFYLPM 60


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 469 PSKPPVDAIXEPAV 510
           PSKP  D   +PAV
Sbjct: 129 PSKPKYDVTWDPAV 142


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 531 VFSCEVPNSGLLYCV 487
           + SC  P   L+YC+
Sbjct: 27  LLSCSFPKKKLVYCI 41


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 531 VFSCEVPNSGLLYCV 487
           + SC  P   L+YC+
Sbjct: 23  LLSCSFPKKKLVYCI 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.141    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,753
Number of Sequences: 336
Number of extensions: 2279
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)