Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O20
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    33   0.039
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   4.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   5.9  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   5.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   5.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.7  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 462  RRRYRRCNIKLRSLENFHAHVFVYLSLKSVSVLNYVWVVTFFAMPND 322
            R ++  C   L SLENF  HV +    KS SV+  +W      +P++
Sbjct: 1001 RCQWEGCLANLHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSE 1047


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +1

Query: 322  IVRHGEEGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIXE 501
            ++R  E  D P + + +   K+ +  D   K L+R   D    +S+   P  PP  A+ +
Sbjct: 1836 LLRRDESKDQPTVYKAKLGEKSHLHYD---KELKRWVNDDGSDLSNQAAPPPPPPMALPK 1892

Query: 502  PAVRNFAAKDASPAGPKPXGS 564
                + A   A P    P G+
Sbjct: 1893 AGPPSAAPTSALPPAGPPAGA 1913


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 176 RAPNHTIP-NVKSTETIRYFXLIRNDRR 96
           RAP   IP NV+S  T+ +F  IRN  R
Sbjct: 444 RAPTFGIPRNVRSLFTLPFFHTIRNIER 471


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 272  CLRHSLKTMWETFLWSVSFGMAKK 343
            CL H ++ +W   LWS    ++KK
Sbjct: 2065 CLVHGIQQIWSAILWSWGDLLSKK 2088


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 483 RRLAGTSRRRYRRCNIKLRSLENF-HAHVFVYLSLKSVSVLNY 358
           RRL      +Y  C IKLR  ++F     F   SL  VS  ++
Sbjct: 157 RRLGMRGHSKYHYCGIKLRGQDSFRRLRTFSDSSLSPVSCSSF 199


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 424 RPQFDVAPSVSSSRGPSKPPVDAIXE 501
           RP  +VAPS + SR PS   V++  E
Sbjct: 308 RPNNEVAPSSAPSRAPSTTSVESNTE 333


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 439 VAPSVSSSRGPSKPPVDAIXEPAVRNFAAKDASPA 543
           +A  ++S   P +PP ++  +P++ N    + SP+
Sbjct: 436 IAEGIASLLNPEEPPSNSDKQPSMSNGPKSEVSPS 470


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 487 QQEACWDLEKKIQKVQHQTAVSRELSC 407
           QQ  CW++ K     +  TA++ E SC
Sbjct: 22  QQFRCWNISKTFLSYRTLTALAIETSC 48


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 469 DLEKKIQKVQHQTAVS 422
           DL+KK+ K+QH T+ S
Sbjct: 899 DLQKKLDKIQHTTSSS 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.141    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,843
Number of Sequences: 5004
Number of extensions: 38219
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)