Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O20
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035...    28   6.0  
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984...    28   6.0  
04_04_0031 - 22289078-22289521,22289702-22289754,22289839-222900...    28   6.0  
09_06_0220 + 21644642-21647293                                         27   7.9  
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    27   7.9  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    27   7.9  

>07_03_0471 +
           18501496-18502104,18503009-18503260,18503367-18503537,
           18503693-18503743,18503868-18503960,18504125-18504220,
           18504318-18504368,18504452-18504570,18504909-18505017,
           18505391-18505513,18505590-18505661,18505963-18506034,
           18506125-18506191,18506260-18506402,18506494-18506565,
           18506632-18506760,18507317-18507472,18507579-18507692,
           18507791-18507889,18507974-18508051,18508402-18508536,
           18509081-18509155,18509247-18509361,18509458-18509828,
           18509903-18509965,18510049-18510120,18510285-18510413,
           18510512-18510628,18510902-18511018
          Length = 1289

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 442 APSVSSSRGPSKPPVDAIXEP--AVRNFAAKDASPAGPKPXGS 564
           +PS SS   P  PP DA  +P  A R      AS + P P  S
Sbjct: 75  SPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSPSPRAS 117


>05_04_0086 -
           17797792-17797810,17798049-17798234,17798319-17798407,
           17798518-17798712,17799364-17799525,17799609-17799681,
           17799929-17799996,17800086-17800133,17800223-17800288,
           17800418-17800488,17800825-17800891
          Length = 347

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 316 VGIVRHGEEGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRG 468
           +GI  H E      IV   N+L+ K+D D  +   ++P   V    SS  G
Sbjct: 294 LGISMHAEASGSCRIVTGDNKLQYKMDSDGNIVFSKQPGLSVDQLHSSQHG 344


>04_04_0031 -
           22289078-22289521,22289702-22289754,22289839-22290092,
           22290189-22290604,22290683-22290970
          Length = 484

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 372 SVLNYVWVVTFFAMPNDTDHRKVSHIVLSE 283
           S+  + W+V  + MP D +H  V  +V+ E
Sbjct: 393 SLRRFGWIVPAYTMPADAEHVAVMRVVIRE 422


>09_06_0220 + 21644642-21647293
          Length = 883

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 PPPLAQNDVGDFPVVGIVRHGEEGDDPHIVEDRNRLKAKIDED 402
           P P  + D  +FP   +V  G EG + ++VE +   + +  E+
Sbjct: 377 PEPEEKVDDSEFPEFDVVDKGVEGQEENVVEAKGAAEEEAKEE 419


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 439 VAPSVSSSRGPSKPPVDAIXEPAVRNFAAKDASPAGPKPXGSN 567
           V P  SSS  P++PP  A    A    AA  A+ A  +   S+
Sbjct: 24  VTPDASSSAPPAEPPAAAAAAVAAAAAAASSAAAAAAQAQASS 66


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 289 QNDVGDFPVVGIVR-HGEEGDDPHIVEDRNRLKAKIDEDMGMK 414
           QN V D  VV I+    +E DDP  ++DR  +   +D    +K
Sbjct: 674 QNTVKDVSVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVK 716


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.141    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,722
Number of Sequences: 37544
Number of extensions: 281771
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)